System identification of a "complex" system

I would like to use labview to extract the transfer function of a closed loop control system.  This system uses a PID loop to control the amplitude and phase of a radio frequency cavity.
I can easily excite the real world system with a step response (or any arbitary excitation).
The step response from the system has both amplitude and phase, and in labview is an array of type "extended complex".
Is the NI system identification toolkit capable of extracting the transfer function in both amplitude and phase?  I have an evaluation version and have been unable to get this working.
Pete.

System Identification uses frequency response based on "bode" graphs. This means that it has two graphs: one representing the magnitude over the frequency range and the second is the phase against frequency (http://en.wikipedia.org/wiki/Bode_plot)
If you see the literature, on complex numbers (http://en.wikipedia.org/wiki/Complex_number), the polar form describes how you can convert Real +/- imaginary to magnitude and phase. Notice that, in general, the magnitude is expressed in log scale and special care is necessary to allow you to use the functions. Fortunately for you, System Identification allow you to use "linear" scale in the conversion. You define this on the "FRF format".
Also, notice that the SI Estimate FRF function is only used when you have the time-domain data (input and output over time) and the other functions in the frequency domain Model Estimation palette are used to convert bode responses into a polynomial in the S-domain or Z-domain.
Please let me know if you still can't configure the functions.
Barp - Control and Simulation Group - LabVIEW R&D - National Instruments

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    0x7fff85dda000 - 0x7fff85e69fff com.apple.PDFKit 2.5.1 (2.5.1) <7B8A187A-F0BB-44E7-FBD4-9E1C5F9D5E85> /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/PDFKit.framew ork/Versions/A/PDFKit
    0x7fff85e6a000 - 0x7fff85eb3ff7 com.apple.securityinterface 4.0.1 (37214) <F8F2D8F4-861F-6694-58F6-3DC55C9DBF50> /System/Library/Frameworks/SecurityInterface.framework/Versions/A/SecurityInter face
    0x7fff85eea000 - 0x7fff85f84fff com.apple.ApplicationServices.ATS 4.4 (???) <395849EE-244A-7323-6CBA-E71E3B722984> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ ATS.framework/Versions/A/ATS
    0x7fff85f85000 - 0x7fff85f99ff7 com.apple.speech.synthesis.framework 3.10.35 (3.10.35) <621B7415-A0B9-07A7-F313-36BEEDD7B132> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ SpeechSynthesis.framework/Versions/A/SpeechSynthesis
    0x7fff85f9a000 - 0x7fff85fdbff7 com.apple.MediaKit 10.3 (485) <0B1646B6-BBEC-774A-A2B5-A89EE5412AD0> /System/Library/PrivateFrameworks/MediaKit.framework/Versions/A/MediaKit
    0x7fff85fdc000 - 0x7fff85fdfff7 libCoreVMClient.dylib ??? (???) <B1F41E5B-8B59-DB81-1654-C1F9B11E885F> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClien t.dylib
    0x7fff85fe0000 - 0x7fff869d6fff com.apple.AppKit 6.6.7 (1038.35) <9F4DF818-9DB9-98DA-490C-EF29EA757A97> /System/Library/Frameworks/AppKit.framework/Versions/C/AppKit
    0x7fff86a9c000 - 0x7fff86b59ff7 com.apple.CoreServices.OSServices 357 (357) <718F0719-DC9F-E392-7C64-9D7DFE3D02E2> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/OSServi ces.framework/Versions/A/OSServices
    0x7fff86b5a000 - 0x7fff86d1bfff libSystem.B.dylib 125.2.1 (compatibility 1.0.0) <71E6D4C9-F945-6EC2-998C-D61AD590DAB6> /usr/lib/libSystem.B.dylib
    0x7fff86d1c000 - 0x7fff86d22ff7 com.apple.DiskArbitration 2.3 (2.3) <857F6E43-1EF4-7D53-351B-10DE0A8F992A> /System/Library/Frameworks/DiskArbitration.framework/Versions/A/DiskArbitration
    0x7fff86d23000 - 0x7fff86d31ff7 libkxld.dylib ??? (???) <4016E9E6-0645-5384-A697-2775B5228113> /usr/lib/system/libkxld.dylib
    0x7fff86d32000 - 0x7fff86d81fef libTIFF.dylib ??? (???) <AE9DC484-1382-F7AD-FE25-C28082FCB5D9> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ ImageIO.framework/Versions/A/Resources/libTIFF.dylib
    0x7fff86d82000 - 0x7fff86de4fe7 com.apple.datadetectorscore 2.0 (80.7) <F9D2332D-0890-2ED2-1AC8-F85CB89D8BD4> /System/Library/PrivateFrameworks/DataDetectorsCore.framework/Versions/A/DataDe tectorsCore
    0x7fff86de5000 - 0x7fff86e71fef SecurityFoundation ??? (???) <6860DE26-0D42-D1E8-CD7C-5B42D78C1E1D> /System/Library/Frameworks/SecurityFoundation.framework/Versions/A/SecurityFoun dation
    0x7fff86e72000 - 0x7fff86e87ff7 com.apple.LangAnalysis 1.6.6 (1.6.6) <DC999B32-BF41-94C8-0583-27D9AB463E8B> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ LangAnalysis.framework/Versions/A/LangAnalysis
    0x7fff86eb7000 - 0x7fff8706efef com.apple.ImageIO.framework 3.0.4 (3.0.4) <2CB9997A-A28D-80BC-5921-E7D50BBCACA7> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ ImageIO.framework/Versions/A/ImageIO
    0x7fff8706f000 - 0x7fff8740cfe7 com.apple.QuartzCore 1.6.3 (227.34) <215222AF-B30A-7CE5-C46C-1A766C1D1D2E> /System/Library/Frameworks/QuartzCore.framework/Versions/A/QuartzCore
    0x7fff8740d000 - 0x7fff8742efff libresolv.9.dylib 41.0.0 (compatibility 1.0.0) <6993F348-428F-C97E-7A84-7BD2EDC46A62> /usr/lib/libresolv.9.dylib
    0x7fff8742f000 - 0x7fff87439fff com.apple.bsd.ServiceManagement 1.1 (1.1) <B319597D-F88B-D975-C07A-7F97B6FB2ACC> /System/Library/Frameworks/ServiceManagement.framework/Versions/A/ServiceManage ment
    0x7fff8743a000 - 0x7fff87469fff com.apple.framework.Admin 4.5 (4.5) <8F5A3803-7C4F-16DA-1B74-B9A1EF92614B> /System/Library/PrivateFrameworks/Admin.framework/Versions/A/Admin
    0x7fff875d4000 - 0x7fff8761bfff com.apple.QuickLookFramework 2.3 (327.6) <11DFB135-24A6-C0BC-5B97-ECE352A4B488> /System/Library/Frameworks/QuickLook.framework/Versions/A/QuickLook
    0x7fff8761c000 - 0x7fff87647ff7 libxslt.1.dylib 3.24.0 (compatibility 3.0.0) <87A0B228-B24A-C426-C3FB-B40D7258DD49> /usr/lib/libxslt.1.dylib
    0x7fff877c6000 - 0x7fff877e3ff7 libPng.dylib ??? (???) <14043CBC-329F-4009-299E-DEE411E16134> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ ImageIO.framework/Versions/A/Resources/libPng.dylib
    0x7fff877ea000 - 0x7fff87823fef libcups.2.dylib 2.8.0 (compatibility 2.0.0) <97F968EB-80ED-36FB-7819-D438B489E46E> /usr/lib/libcups.2.dylib
    0x7fff87824000 - 0x7fff8786bff7 com.apple.coreui 2 (114) <D7645B59-0431-6283-7322-957D944DAB21> /System/Library/PrivateFrameworks/CoreUI.framework/Versions/A/CoreUI
    0x7fff8786c000 - 0x7fff8788ffff com.apple.opencl 12.3 (12.3) <D30A45FC-4520-45AF-3CA5-092313DB5D54> /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
    0x7fff87890000 - 0x7fff87893ff7 com.apple.securityhi 4.0 (36638) <38935851-09E4-DDAB-DB1D-30ADC39F7ED0> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SecurityHI.fr amework/Versions/A/SecurityHI
    0x7fff87894000 - 0x7fff87994fef com.apple.DiskImagesFramework 10.6.5 (289) <ABC5E39D-B7F4-0966-55A9-B517F4D4B7AC> /System/Library/PrivateFrameworks/DiskImages.framework/Versions/A/DiskImages
    0x7fff87995000 - 0x7fff879b0ff7 com.apple.geokit 1.0 (1.0) <38638BCB-2AE8-DD98-A868-CF8279146733> /System/Library/PrivateFrameworks/GeoKit.framework/Versions/A/GeoKit
    0x7fff879b1000 - 0x7fff87a60fff edu.mit.Kerberos 6.5.10 (6.5.10) <F3F76EDF-5660-78F0-FE6E-33B6174F55A4> /System/Library/Frameworks/Kerberos.framework/Versions/A/Kerberos
    0x7fff87a61000 - 0x7fff87a87fe7 libJPEG.dylib ??? (???) <6690F15D-E970-2678-430E-590A94F5C8E9> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ ImageIO.framework/Versions/A/Resources/libJPEG.dylib
    0x7fff87a88000 - 0x7fff87aafff7 com.apple.frameworks.preferencepanes 13.5 (13.5) <C79DCAF8-302A-843F-BE9B-407DDA682A8E> /System/Library/Frameworks/PreferencePanes.framework/Versions/A/PreferencePanes
    0x7fff87b35000 - 0x7fff87b7afff com.apple.CoreMediaIOServices 133.0 (1158) <53F7A2A6-78CA-6C34-0BB6-471388019799> /System/Library/PrivateFrameworks/CoreMediaIOServices.framework/Versions/A/Core MediaIOServices
    0x7fff87b7b000 - 0x7fff87ceafe7 com.apple.QTKit 7.6.6 (1756) <250AB242-816D-9F5D-94FB-18BF2AE9AAE7> /System/Library/Frameworks/QTKit.framework/Versions/A/QTKit
    0x7fff87d10000 - 0x7fff87d61fef com.apple.HIServices 1.8.1 (???) <BE479ABF-3D27-A5C7-800E-3FFC1731767A> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ HIServices.framework/Versions/A/HIServices
    0x7fff87d69000 - 0x7fff87e4efef com.apple.DesktopServices 1.5.9 (1.5.9) <27890B2C-0CD2-7C27-9D0C-D5952C5E8438> /System/Library/PrivateFrameworks/DesktopServicesPriv.framework/Versions/A/Desk topServicesPriv
    0x7fff87e4f000 - 0x7fff87f10fe7 libFontParser.dylib ??? (???) <8B12D37E-3A95-5A73-509C-3AA991E0C546> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ ATS.framework/Versions/A/Resources/libFontParser.dylib
    0x7fff88016000 - 0x7fff88030fff com.apple.ScriptingBridge 1.1.2 (???) <5F88CE7E-D66B-A33B-CA03-A4EAAE37D074> /System/Library/Frameworks/ScriptingBridge.framework/Versions/A/ScriptingBridge
    0x7fff8812a000 - 0x7fff8812eff7 libCGXType.A.dylib 545.0.0 (compatibility 64.0.0) <63F77AC8-84CB-0C2F-8D2B-190EE5CCDB45> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ CoreGraphics.framework/Versions/A/Resources/libCGXType.A.dylib
    0x7fff8812f000 - 0x7fff8813dff7 com.apple.Collaboration 38 (38) <ACD0F7F7-A342-CFBC-9BB8-906CDDCCB070> /System/Library/Frameworks/Collaboration.framework/Versions/A/Collaboration
    0x7fff8818e000 - 0x7fff882affe7 libcrypto.0.9.8.dylib 0.9.8 (compatibility 0.9.8) <48AEAFE1-21F4-B3C8-4199-35AD5E8D0613> /usr/lib/libcrypto.0.9.8.dylib
    0x7fff882b0000 - 0x7fff882dfff7 com.apple.quartzfilters 1.6.0 (1.6.0) <9CECB4FC-1CCF-B8A2-B935-5888B21CBEEF> /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzFilters .framework/Versions/A/QuartzFilters
    0x7fff882e0000 - 0x7fff882f6fe7 com.apple.MultitouchSupport.framework 207.10 (207.10) <1828C264-A54A-7FDD-FE1B-49DDE3F50779> /System/Library/PrivateFrameworks/MultitouchSupport.framework/Versions/A/Multit ouchSupport
    0x7fff883c3000 - 0x7fff884cdff7 com.apple.MeshKitIO 1.1 (49.2) <F296E151-80AE-7764-B969-C2050DF26BFE> /System/Library/PrivateFrameworks/MeshKit.framework/Versions/A/Frameworks/MeshK itIO.framework/Versions/A/MeshKitIO
    0x7fff884ce000 - 0x7fff8850ffef com.apple.QD 3.36 (???) <5DC41E81-32C9-65B2-5528-B33E934D5BB4> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ QD.framework/Versions/A/QD
    0x7fff88510000 - 0x7fff88796fef com.apple.security 6.1.1 (37594) <17CF7858-52D9-9665-3AE8-23F07CC8BEA1> /System/Library/Frameworks/Security.framework/Versions/A/Security
    0x7fff88797000 - 0x7fff887a2fff com.apple.corelocation 12.1 (12.1) <0B15767B-D752-7DA6-A8BB-5A1C9C39C5C8> /System/Library/Frameworks/CoreLocation.framework/Versions/A/CoreLocation
    0x7fff887b9000 - 0x7fff887fdfe7 com.apple.ImageCaptureCore 1.0.3 (1.0.3) <913FFA89-0AC8-0A8D-CC2A-364CB0F303BA> /System/Library/Frameworks/ImageCaptureCore.framework/Versions/A/ImageCaptureCo re
    0x7fff88849000 - 0x7fff88a8bfef com.apple.AddressBook.framework 5.0.3 (875) <78FDBCC6-8F4C-C4DF-4A60-BB038572B870> /System/Library/Frameworks/AddressBook.framework/Versions/A/AddressBook
    0x7fff88a8c000 - 0x7fff88a97ff7 com.apple.speech.recognition.framework 3.11.1 (3.11.1) <F0DDF27E-DB55-07CE-E548-C62095BE8167> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SpeechRecogni tion.framework/Versions/A/SpeechRecognition
    0x7fff88a98000 - 0x7fff88baffef libxml2.2.dylib 10.3.0 (compatibility 10.0.0) <EE067D7E-15B3-F043-6FBD-10BA31FE76C7> /usr/lib/libxml2.2.dylib
    0x7fff88bb0000 - 0x7fff890b4fe7 com.apple.VideoToolbox 0.484.20 (484.20) <8B6B82D2-350B-E9D3-5433-51453CDA65B4> /System/Library/PrivateFrameworks/VideoToolbox.framework/Versions/A/VideoToolbo x
    0x7fff890b5000 - 0x7fff890d5ff7 com.apple.DirectoryService.Framework 3.6 (621.9) <FF6567B5-56BD-F3EC-E59D-1EC583C3CF73> /System/Library/Frameworks/DirectoryService.framework/Versions/A/DirectoryServi ce
    0x7fff890d6000 - 0x7fff8915bff7 com.apple.print.framework.PrintCore 6.3 (312.7) <CDFE82DD-D811-A091-179F-6E76069B432D> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ PrintCore.framework/Versions/A/PrintCore
    0x7fffffe00000 - 0x7fffffe01fff libSystem.B.dylib ??? (???) <71E6D4C9-F945-6EC2-998C-D61AD590DAB6> /usr/lib/libSystem.B.dylib
    Model: MacBookPro5,3, BootROM MBP53.00AC.B03, 2 processors, Intel Core 2 Duo, 2.66 GHz, 4 GB, SMC 1.48f2
    Graphics: NVIDIA GeForce 9600M GT, NVIDIA GeForce 9600M GT, PCIe, 256 MB
    Graphics: NVIDIA GeForce 9400M, NVIDIA GeForce 9400M, PCI, 256 MB
    Memory Module: global_name
    AirPort: spairportwireless_card_type_airportextreme (0x14E4, 0x8D), Broadcom BCM43xx 1.0 (5.10.131.36.1)
    Bluetooth: Version 2.3.8f7, 2 service, 19 devices, 1 incoming serial ports
    Network Service: AirPort, AirPort, en1
    Serial ATA Device: ST9320423ASG, 298.09 GB
    Serial ATA Device: HL-DT-ST DVDRW GS23N, 4.64 GB
    USB Device: Internal Memory Card Reader, 0x05ac (Apple Inc.), 0x8403, 0x26500000
    USB Device: Built-in iSight, 0x05ac (Apple Inc.), 0x8507, 0x24400000
    USB Device: Apple Internal Keyboard / Trackpad, 0x05ac (Apple Inc.), 0x0236, 0x04600000
    USB Device: IR Receiver, 0x05ac (Apple Inc.), 0x8242, 0x04500000
    USB Device: BRCM2046 Hub, 0x0a5c (Broadcom Corp.), 0x4500, 0x06100000
    USB Device: Bluetooth USB Host Controller, 0x05ac (Apple Inc.), 0x8213, 0x06110000

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