System preferences fails to recognize a new ext. HD to which my MacPro has been cloned (with SuperDuper). I want to check to be sure that it will function as a start up disk.

I have a new 3 TB Western Digital ext. HD. I used Super Duper to clone my MacPro HD to the ext. HD. I want to be certain that I can use it as a Startup disk in an emergency. To test this, I wanted to restart with the new drive as the startup disk.  The disk image is on the desk top and the computer recognizes it but in System Preferences>Startup Disk, it does not appear. Any ideas?    Mid 2010 MacPro w/ Yosemite 10.10.1
System Report>System Info>Storage lists the new ext. HD but System Preferences>Startup disk does not show it.
Many thanks.

I did not see anything about GUID there. I formatted with Disk Utility as Mac OS Extended (Journaled) but I think I erred there. On the left column, there is a list of items. Next to the bottom, it lists my HD on 2 lines. On the very bottom line, after an indent, the HD is listed once again. I selected the indented lower line to clone to. I'll bet that I should have selected the upper line.
When I click on the upper line, Disk Utility blank space after "Format" fills in with MS-DOS (FAT).  I'll change that to Mac OS Extended (Journaled) and clone to that line selection.
You gave me the idea to re-check Disk Utility and recognize what I think was my error. However, I am not going to prove that. I shall install Yosemite on the ext. HD and go from there.  I never would have thought of that. Thank to y'all and that includes LINC.  Great help!

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