The apps sync option has changed in itunes

The apps that were in iTunes used to listed for each device: in the sync apps section under the apps header in itunes. Each app in your itunes library was in the list and you could sort it by name/kind/etc. and by hittling the checkbox, you could either load or unload that app from your device after the next sync. You could also see all the apps and you could find out which ones had updates.
Now with iTunes 11, you only see the apps that are installed on the device. For instance, I had a  bunch of apps on an ipad 1 and I gave that away, so I could transfer some or all of the apps onto an ipad 2. But wait, when I plug in the ipad 2, there is no list of uninstalled apps that I can choose between. Where did it go? I have an iphone with a bunch of free and paid apps: those apps show up in the phone, but not in the list of apps.
thanks
Jim

If the iPod does not appear in iTunes then:
iOS: Device not recognized in iTunes for Mac OS X
iOS: Device not recognized in iTunes for Windows
If the iPod was set up via wif or synced to another computer/iTunes library then:
Syncing to a "New" Computer or replacing a "crashed" Hard Drive: Apple Support Communities
since you can only sync to one computer/iTunes library
However, you can manually sync music and videos from different computer/libraries if you use the manual method included here:
iTunes: Syncing media content to iOS devices and iPod

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