The best format for output

Hi All,
working in animation project to be broadcasted on a TV channel as HD1080 50i,
1- all the animation layers was rendered from TOONBOOM as .SWF to keep it in vector for compositing issue.
Dose SWF lose any quality? we always use TGA sequence with alpha in our past SD projects but now we found SWF is a smaller file size and allows zooming Because it keeps all vector lines.
2- compositing each scene in after effects cs6 and then render them.
What is the best format for output to deal with premiere cs6 as a real time playback ( my editing pc includes gtx680 4gb., many HGST 3tb with raid controller,64g ram, aja kona 3g) so do I go with TGA sequence (I think it will destroy the raid Because of the large number of small-sized files in read and write ) or MOV uncompressed (I'm afraid of the space size and don’t know it will play in real time ) or what is the best compressed format Maintaining video image quality as its now will be my only master source?
Many thanks,
sherif

Thanks Rick for your reply,
Regarding the SWF i moved to flash pro forums and they are supporting me now,
My system is a pc, win.64, I7-3930K, 64G RAM, EVGA GTX680 4G, Many HGST 3TB with raid controler,
Some advised me to go with Quicktime Prores HQ or DNXHD or DPX ,
In this year project my client's requirement for delivery is :
DNxHD 120 Codec, wrapped with QuickTime rapper, which means a file with MOV extension and the codec used is DNxHD 120 ( 1080@50i HD)
So do i work with dnxhd 120 from the beginning to the delivery? (and it will be my only master source) or another format encode it at the end to dnxhd 120? ( i will distribut this project to many channels after the first run exclusivity period end with different requirements).
Thanks,
Sherif

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