The launching time of integration builder is extremely longer

Dear XI experts
I will tell you our story.
When I execute Demo examples (Chapter 5.1.3 Executing and Testing XI 3.0 Demo Examples Configuration)
We got the error STRING_BAD_REF dump when starting BSP application, I found out the solution : SAP Note Number : 869197
We did upgrade to a 6.40 kernel patch level 48 as mentioned in the SAP note.
After that, whenever I launch (start) the integration builder, it takes for ages.
Between [login screen]
http://static.flickr.com/56/117541396_db88ce7101_o.jpg
And [integration builder launching screen]
http://static.flickr.com/35/117541397_4bc79529e8_o.jpg
Ironically the websites related to Java engine pop up as usual, such as SLD, Java start page and so on. Also after few minutes I can get the integration builder in front of my eyes. However, whenever I try to create objects or call some information from the server it also takes time.
Which part do I need to look at in details?
Thank you for your reading.
I will appreciate your any comment.
Regards,
David

I collect some posts related to my problem ( i think ).
Slow response time
Problems in RWB XI 3.0
XI Running Very Slow
XI Running Very Slow
Performance Tuning
Re: Performance Tuning
Problems after Update to SP13
Problems after Update to SP13
Server Performance Declines
Server Performance Declines
Performance Analysis with Single Message
http://help.sap.com/saphelp_erp2005/helpdata/en/42/e7bb8f7c9d3ee0e10000000a1553f6/content.htm
Problems in RWB XI 3.0
Mapping tool very slow after upgrade to SP15

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The launching time of integration builder is extremely longer

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