The Levels bar into the red after normalization

Sorry if this is a daft question, I am new to home recording and need to submit my audio via specific guidelines.  I'm trying to get into audiobook production.  I have a strong theatrical background but i don't know much about mastering audio so this has been challenging...
In the raw file, the levels were primarily in green, occasionally in yellow.
I used "match volume" to get my RMS to a certain level.  Then I used a limiter to set to -3 db.
Now the file goes into the red.  According to Amplitude statistics.  there are 0 "possibly clipped samples" so why then do the levels keep going into Red?  I thought that was indicative of clipping?
That's my first question, my second is does anyone know of any basic audio mastering classes for voiceover using Adobe Audition?  Less about how to edit audio, more about anatomy of audio files and the meaning of each of these parameters and how they relate to one another. 

Thanks for your response.  I probably did a terrible job of explaining.
I did originally try the "normalize" option and then the limiter but my RMS stats were too high to submit the audio book. They recommend normalizing peaks at -6db,  I found this video which states that you can normalize via RMS levels by match volume:  How to Normalize Audio Peak and RMS in Adobe Audition CS 5.5 Tutorial - Normalization - YouTube which I thought would at least bring that RMS number down so I was within their required range.  It did so all my amplitude specs meet their specs now but I'm just a little perplexed by the red in the level bar.
This is all very new to me and I need to educated myself.  I don't even really understand the difference between normalization and compression and why one is favored over the other.  This is all really kind of over my head.  I think I can learn it but I need someone to explain it to my in layman's terms.
When I do a raw recording, my Total RMS is always way over the recommended RMS the audiobook production company suggests a pre-mastered file should have.  Lowering  the gain makes the peak amplitude too low. That should be at -12 max while the RMS should be no greater than -28.  RMS is around -40.  So in a sorta related question, while recording, how do i lower my RMS without killing the peak amplitude. 

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