The "other" capacity on my 3gs phone is at 8.9 GB how do I clean it out?

what's going on with "other" taking up so much space?

I assume you mean 2.9 GB, not MB; I've never seen other less that 300 MB.
"Other" data is real data that you put on your phone by using the built in apps. It is not music, not videos, not pictures and not App Store app data. It is "OTHER" meaning everything that does not fall into these categories. Such as:
email messages and attachments
Reminders
Calendar entries
Contacts
Text messages
MMS messages and attachments
Genius data
Music cover art
Operating system settings
Safari cache
bookmarks
Game Center status
Music catalog
Probably a few I've missed. There was a problem in an earlier version where deleted MMS messages left behind their attachments, but that has been fixed as of 6.1. However, old images were not deleted from Other; its just that new images were being correctly removed when you delete an MMS message.
You will find posts from people who said they recovered over 3 GB of space by just deleting old text messages.
If you want Other to be smaller you will have to keep less data on your phone; delete old MMS and texts, delete old email (especially from the "deleted" folder), clear the cache, eliminate cover art.
Sometimes "Other" includes data corruption. If you suspect this is a possibility try connecting to iTunes and click the Restore iPhone button. First restore from backup; the Other doesn't get any smaller you can Restore again and set up as New, then add your content back separately from your backup.

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