Think I've Messed Up - Help!

Hi all,
I recently got my hard drive replaced in the Seagate Hard Drive Replacement Program and after that Logic seemed a bit sluggish (apparently because I backed up from Time Machine).
On Monday, I noticed that I was running low on disk space so I did a few things to get rid of excess files - used iBoostup to delete caches and language files etc, removed some installed Applications I didn't use, got rid of old files.
I'm not sure what it was that did it but my computer is so slow now.  Internet browsing takes forever (if the pages load up at all), downloading a document from email is labourious and some PDFs won't even open.
I feel I must have deleted something important or ruined the system in some way when clearing space.  Any ideas?  And if so, can I do anything with Time Machine to restore the system to how it was?
Ben
PS Late 2009 iMac with Lion.  (I do have Mountain Lion installed on my Macbook but not been keen on it so haven't used it on the iMac yet.  However, if you think this will help performance then I'll give it a go!)

Look at these two links for assistance:
http://pondini.org/OSX/DiskSpace.html
https://discussions.apple.com/docs/DOC-3521
Also an excellent tool to use is OmniDiskSweeper which can be downloaded from the Internet (free).  It will show all your files and the respective sizes.  Delete those which you do not need.
Ciao.

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