Time Code Confusion

I'm running into a timecode problem and not sure what's going on.
Here's what's happening. I'm trying to capture the beginning of a tape. I have set my time code in and out points to 05:34:47:08 to 05:37:07:07. I'm using a DSR-11 deck which is set to display the timecode (of the tape) on my monitor. The Log and Capture window in FCP shows the same timecode that's coming from the deck. Both the monitor and log and capture will display the same time code for the out point. When I'm capturing the clip it's like FCP has a mind of it's own. It continues capturing well past the out point. When it does stop and I double click it into the viewer the output time code says 05:37:07:07, but the audio and video are different. Both the monitor and log and capture timecodes show 05:37:08:19 as the outpoint. I've captured other parts of the tape but now I'm not sure if the timecodes are correct because the "additional" footage overlapse footage that I've already captured which have different timecodes.
How do I know which timecode is correct the one that's being displayed on the monitor and in log and capture or the timecode of the captured clip? Is it possible to have two different timecodes on the same tape? The tape stock is new.
I hope this makes sense. Has anyone else had this problem?
Thanks.

My sequence setting is DV NTSC, 29.97 edit time base and a audio rate of 48kHz, 16 bit. The digitized clip has these setting. When I play the clip section from the DV Cam tape I get the audio as recorded at 48kHz.

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