Time Machine and Disk Permissions + Compatibility with Snow Leopard

I have received warning from Disk Utility that I should repair permissions as several files show incorrect permissions and, more than that, my 750GB shows "769GB available".
My questions are:
1. If I use Command+R and rebuild the disk from a Time Machine backup, will permissions be reset or will the files just be copied as they are now?
2. Is there a way to verify the TM backups to check the files therein?
3. Suppose, just for the sake of an exercise, that I reload Snow Leopard; can I still use SL's Time Machine to read a Lion Time Machine backup?
Thanks in advance for any advice you can provide!
Fernando

Why are you repairing permissions? It's a waste of time unless you have a specific reason to do it, and the warnings don't mean anything.
To verify your Time Machine backup, proceed as below.
Launch the Terminal application in any of the following ways:
☞ Enter the first few letters of its name into a Spotlight search. Select it in the results (it should be at the top.)
☞ In the Finder, select Go ▹ Utilities from the menu bar, or press the key combination shift-command-U. The application is in the folder that opens.
☞ Open LaunchPad. Click Utilities, then Terminal in the page that opens.
Drag or copy — do not type — the following line into the Terminal window, then press return:
sudo tmutil compare
You'll be prompted for your login password, which won't be displayed when you type it. You may get a one-time warning not to screw up.
The command will take at least a few minutes to run. Eventually some lines of output will appear below what you entered.
Each line that begins with a plus sign (“+”) represents a file that has been added to the source volume since the last snapshot was taken. These files have not been backed up yet.
Each line that begins with an exclamation point (“!”) represents a file that has changed on the source volume. These files have been backed up, but not in their present state.
Each line that begins with a minus sign (“-“) represents a file that has been removed from the source volume.
Files that you’ve excluded from backup, or that are excluded automatically, are ignored.
At the end of the output, you’ll get some lines like the following:
Added:
Removed:
Changed:
These lines show the total amount of data added, removed, or changed on the source(s) since the last snapshot.

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