Time Machine back-up/restore after hard drive failure - lost data

Our iMac was subject to a hard drive recall.  So before getting the hard drive replaced, I did a full Time Machine backup (over wifi to a HD connected to Airport Extreme).  Once done, I took the iMac to the Genius Bar and they sent me home with a machine with a new copy of the OS installed.
Came home and upon setting up OSX, I selected something like "restore from Time Machine backup."  Told it where the drive was.
I now realize that the most recent back-up that is on that drive is from January 2012.  So I lost ten months of data.  When I look at Finder at the external drive, in the Backups.backupdb folder, all of the dates there are 2012-01-10-XXXXXXX.  There is also a "latest" folder in there, but that also looks old.
So first, does anyone have any suggestions on where to look for this full backup I did?  When I enter Time Machine, the time bar on the right only shows "latest" and "January 2012."  Interestingly, it does not have older backups either.
Note - the backup I did was a manual one.  I stopped having Time Machine do automatic backups because they took way too long over the air.  So I would start manual backups about once per month.  I never thought to check the hard drive to see if they were there.
Thanks for any help.

I think I have solved half of this.  Upon starting the Mac after the disk swap, when I went to restore from Time Machine, I disconnected the drive from Airport Extreme and connected it directly to the Mac via USB.  Apparently, this is not ok.
I reconnected the drive to Airport Extreme and now can see all of the backups. 
So my question now is whether (1) do I revert to the week-old Time Machine (I want to do this) and (2) do I have to do it over wifi or is there a way for me to access this backup via a direct connection?  I'm worried that over wifi, it will take days to restore (it's only 100 GB, but it seems to take forever).
Thanks in advance.

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