Time Machine backups of Mail: no email messages

I have a problem with Time Machine backups of emails. If I open the Mail app and enter Time Machine, it shows no emails (for one account) and only a couple  of very old email messages for another. There are actually gigabytes of emails in both accounts. I wonder what's wrong, since the files from ~/Library/Mail seem to be backed up by Time Machine. Can I make Time Machine show backups of individual messages? Mail app is setup to access Gmail with IMAP.
Thanks

I just noticed this myself and I think I know what might be going on. Mail no longer keeps seperate copies of all the email that is in each folder, including the Inbox. It keeps one copy of the email in the gmail All Mail folder and then uses tags to make that email show up in the differnet folders but it does not make an actual copy in the folders. So Time Machine is backing up the actual email file that is in All Mail but as far as it is concerned there are no emails in any of the other folders.
This does not explain why there still might be old emails showing up in the folders, I have this happening too. Maybe it's an artifact from the conversion from the old Mail to the new Maverics Mail. I have also not tried to restore an email yet so I don't know if the folder metadata is being backup up or not. I hope it is otherwise all I can do is restore the All Mail folder but I would have to manually put email back into the correct folders.

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