Time Machine did not restore my MacBook Pro, many iOS apps were missing and replaced with "?" in the dock.

Hi all,
This weekend I had issues restoring my MacBook pro using Time Machine. I was left with question marks in the dock for the folloing apps in Bold, the others are not on the dock but they could not be found..
1. Safari
2. LaunchPad
3. Missing Control
4. Mail
5. System Preferences
6. Photo Booth
7. Terminal
8, Itunes
9. Disk Utility
10. iText Express
11. Notes
12. Maps
13. XCode
14. iPhoto
15. Calendar
They were not in Finder, and as the Lauchpad icon was not there I could not check there either. Spotlight was not showing them either. They simply were not there on the Mac.
I checked on Time Machine and they could not be found there either. I don't believe they were backed up by Time Machine in the first place. I do not have any programmes or applications excluded in the TM preferences.
Its interesting that all my 3rd party apps were there, all the missing ones are from the Maverics iOS.
I ended up having to reinstall Mavericks via a VERY SLOW internet connection and hey presto, everything came back to normal.
It was a very tense few hours as I thought I had lost the lot, photo's and itunes collections etc.
Time Machine is sold to us by Apple as the perfect solution to keep your data safe and recoverable.... Really?
I do like Apple products, but this has left me a little unsure about them now, its like the trust and confdence goes when you catch your child stealing and lying to you...The confidence will come back but I guess I will always be a little warey now..
Apple, please do something about this - I have paid through the nose for a robust system that I can rely on, not one that has aged me by 10 years...

It appears only the applications where missing. So your own data were safe all the time. However...
There appears to be a bug in Time Machine that causes it to exclude items that aren't supposed to be excluded. To check if that is the case, you can find more information here: http://pondini.org/TM/D10d.html
It appears the bug is very difficult to reproduce, mainly because in most cases it is only discovered when people try to restore an existing installation.

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Janet.b wrote:
About 3 years old...pretty dated now I guess. Am thinking I may just need to have it upgraded by a Mac tech.
For what the Apple Store's charge you can buy almost buy a new computer.
Just for giggles I brought my old laptop in for a drive upgrade and asked, they wanted $600 for a drive that only cost $120 at the time and it was a slow 5,400 RPM drive. The new Mac's of a similar make were going for $1000.
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parkerlj wrote:
It is logged in under apple right now.
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