Time Machine Only Displays Desktop Items

I'm using a 2GHz Intel Core Duo iMac, using Time Machine to backup to a 400GB Iomega external drive.
The problem is when I go in to Time Machine to 'look back in time', the only items which appear in the historical finder windows are those items or folders actually located on my desktop, but excluding "Macintosh HD". This means, for example, if I want to restore an old file from my "Documents" folder of 1 week ago, I can not, as this can not be accessed via the desktop (bearing in mind the Macintosh HD icon also does not appear).
Any ideas? Time Machine preferences do not account for this problem - I have not restricted backup to desktop items only.

You should post your question in the "Time Machine" discussion area.
This is the "Time Capsule" discussion area.

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    Please read this whole message before doing anything.
    This procedure is a test, not a solution. Don’t be disappointed when you find that nothing has changed after you complete it.
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    Enable guest logins* and log in as Guest. For instructions, launch the System Preferences application, select Help from the menu bar, and enter “Set up guest users” (without the quotes) in the search box. Don't use the Safari-only “Guest User” login created by “Find My Mac.”
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    After testing, log out of the guest account and, in your own account, disable it if you wish. Any files you created in the guest account will be deleted automatically when you log out of it.
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    The purpose of this step is to determine whether the problem is caused by third-party system modifications that load automatically at startup or login.
    Disconnect all wired peripherals except those needed for the test, and remove all aftermarket expansion cards. Boot in safe mode* and log in to the account with the problem. The instructions provided by Apple are as follows:
    Shut down your computer, wait 30 seconds, and then hold down the shift key while pressing the power button.
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    georgeShawkins wrote:
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