Time machines encryption seen as 2 hard drives?

Hello,
i've two different hard drive where i do the time machine backup with encryption. I let time machine handle
the entire disk and the encryption process. But everytime i unmount the drive, osx tell me that it is unmounting
two partition and ask me to confirm it. Sometimes this doesn't work and i've to wait for minutes before unplugging
the usb cable and it sais to me that the drive was unsecurely removed. The fact is that in both disk i just
see one partition only, there is no trace of any other partition even from disk utility.
This happens on both drives and a third drive did the same too. Any other with this boring problem?
Thanks!

I've found out that the problem occurs only after i do a backup. If i connect one of the drive but i unmount it before time machine start to backup, the problem doesn't occur. I've tried to do a timemachine backup while in safe mode but seems it never start, now i will try again. This is the result of the command via terminal on another disk, before and after the backup. Seems something is different at the beginning:
BEFORE:
/dev/disk0
   #:                       TYPE NAME                    SIZE       IDENTIFIER
   0:      GUID_partition_scheme                        *500.1 GB   disk0
   1:                        EFI                         209.7 MB   disk0s1
   2:                  Apple_HFS Macintosh HD            499.2 GB   disk0s2
   3:                 Apple_Boot Recovery HD             650.0 MB   disk0s3
/dev/disk1
   #:                       TYPE NAME                    SIZE       IDENTIFIER
   0:      GUID_partition_scheme                        *500.1 GB   disk1
   1:                        EFI                         209.7 MB   disk1s1
   2:          Apple_CoreStorage                         499.7 GB   disk1s2
   3:                 Apple_Boot Boot OS X               134.2 MB   disk1s3
/dev/disk2
   #:                       TYPE NAME                    SIZE       IDENTIFIER
   0:     Apple_partition_scheme                        *17.3 MB    disk2
   1:        Apple_partition_map                         32.3 KB    disk2s1
   2:                  Apple_HFS Flash Player            17.3 MB    disk2s2
/dev/disk3
   #:                       TYPE NAME                    SIZE       IDENTIFIER
   0:                 Apple_HFSX MyPassport TM          *499.4 GB   disk3
CoreStorage logical volume groups (1 found)
|
+-- Logical Volume Group 5BDE6D8D-43A4-4761-AE49-68EBBD712BD6
    =========================================================
    Name:         Backup
    Size:         499730309120 B (499.7 GB)
    Free Space:   0 B (0 B)
    |
    +-< Physical Volume 25D95AEC-E36A-416E-AE62-EFB7ED4D263A
    |   ----------------------------------------------------
    |   Index:    0
    |   Disk:     disk1s2
    |   Status:   Online
    |   Size:     499730309120 B (499.7 GB)
    |
    +-> Logical Volume Family 244B3518-FE91-4F56-91B8-BB02C58C6C0A
        Encryption Status:       Unlocked
        Encryption Type:         AES-XTS
        Conversion Status:       Complete
        Conversion Direction:    -none-
        Has Encrypted Extents:   Yes
        Fully Secure:            Yes
        Passphrase Required:     Yes
        |
        +-> Logical Volume 6B226218-53A0-4FEF-B5AE-F7EE6A9AFD43
            Disk:               disk3
            Status:             Online
            Size (Total):       499411537920 B (499.4 GB)
            Size (Converted):   -none-
            Revertible:         Yes (unlock and decryption required)
            LV Name:            MyPassport TM
            Volume Name:        MyPassport TM
            Content Hint:       Apple_HFSX
AFTER:
/dev/disk0
   #:                       TYPE NAME                    SIZE       IDENTIFIER
   0:      GUID_partition_scheme                        *500.1 GB   disk0
   1:                        EFI                         209.7 MB   disk0s1
   2:                  Apple_HFS Macintosh HD            499.2 GB   disk0s2
   3:                 Apple_Boot Recovery HD             650.0 MB   disk0s3
/dev/disk1
   #:                       TYPE NAME                    SIZE       IDENTIFIER
   0:      GUID_partition_scheme                        *500.1 GB   disk1
   1:                        EFI                         209.7 MB   disk1s1
   2:          Apple_CoreStorage                         499.7 GB   disk1s2
   3:                 Apple_Boot Boot OS X               134.2 MB   disk1s3
/dev/disk2
   #:                       TYPE NAME                    SIZE       IDENTIFIER
   0:                 Apple_HFSX MyPassport TM          *499.4 GB   disk2
CoreStorage logical volume groups (1 found)
|
+-- Logical Volume Group 5BDE6D8D-43A4-4761-AE49-68EBBD712BD6
    =========================================================
    Name:         Backup
    Size:         499730309120 B (499.7 GB)
    Free Space:   0 B (0 B)
    |
    +-< Physical Volume 25D95AEC-E36A-416E-AE62-EFB7ED4D263A
    |   ----------------------------------------------------
    |   Index:    0
    |   Disk:     disk1s2
    |   Status:   Online
    |   Size:     499730309120 B (499.7 GB)
    |
    +-> Logical Volume Family 244B3518-FE91-4F56-91B8-BB02C58C6C0A
        Encryption Status:       Unlocked
        Encryption Type:         AES-XTS
        Conversion Status:       Complete
        Conversion Direction:    -none-
        Has Encrypted Extents:   Yes
        Fully Secure:            Yes
        Passphrase Required:     Yes
        |
        +-> Logical Volume 6B226218-53A0-4FEF-B5AE-F7EE6A9AFD43
            Disk:               disk2
            Status:             Online
            Size (Total):       499411537920 B (499.4 GB)
            Size (Converted):   -none-
            Revertible:         Yes (unlock and decryption required)
            LV Name:            MyPassport TM
            Volume Name:        MyPassport TM
            Content Hint:       Apple_HFSX

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