TM Skipping some files during backup

I've posted this question over on the TC board, because at first I thought it was related to the actual hardware. However, today I did a new back up to an external WD drive via firewire. The back up when fine, as did a few subsequent backups. Then TM acts like it is backing up. I can enter time machine and see all the hourly back ups. However, when I look for a specific file that was just recently added/deleted/etc. it was missed by TM.
Any suggestions for what is going on? I would greatly appreciate any help.
Thanks!

Are there any relevant console messages (backupd process)? And is this just a particular file that doesn't appear in the backup or do no files appear in the backup? What exactly are you seeing?

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