TOC missing pages & strange order

I just noticed that when I let RoboHelp AutoCreate the TOC it is not including all the pages, I have noticed this in one particular folder:
Project Manager
HTML Files (Topics)
     Database
          Connection Issues
          Database BackupRestore
          Mirroring
In the TOC it only shows
Database
     Database BackupRestore
I cannot see anythning different in how the pages are set up or in their properties and I havent found this issue happen in any of the other pages/folders.
One other issue is that the TOC isn't ordering alphabetically even though it is ordered alphabetically in the Project Manager. Is there a better way than manually ordering the pages/folders after you have autocreated the TOC?
Thanks very much
Tom

There appears to be a problem where some of the books are formatted in an older epub format that is not supported by the iBook reader. For non DRMed books you can pull the book into a tool for publishing to epub and republish the book which will fix the problem.
At this point it appears that Apple either needs to ask the publisher of the various books with this problem to reformat them for the newer epub standard or they need to adjust iBooks to handle the older format. I am no up to 5 books like this out of the ones I have bought. ::sigh::

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0A68541       SBB ICI7-2720QM
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TOC missing pages & strange order

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