TOC, Search, Index does not work after hosting published files in Multiscreen HTML5

I have generated and published the files for multiscreen html5. The default screen layout is Desktop_layout. When I access index.htm directly from the published location, every function and all details work beautifully. However, once I host the published files in IIS, and type the URL in Google Chrome, the screen layout is all messed up. TOC, Index, Glossary and the Search function does not work. Please help/suggest/guide.

Could this be related to IIS? I host it locally on IIS (8.0 on Windows 8.1 Pro) and on Apache without any problems. But IIS can give trouble if the folder security options are not set correctly, so please make sure the IIS User has full read rights on all directories and files.
Kind regards,
Willam

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