Transcode problem in Encore after 5.03 patch applied to Premiere Pro

Is this a BUG?????? does anyone else has similar problem or it is just me?
Media Encoder Or Encore stops transcoding video after new update 5.03 has been installed
PPro Project is 60 min using AVCHD30(60i) presets
Video AVCHD 1920x1080 60i Audio LPCM.
One video track with video clips trimmed down to 50min. Then short clip  of AVCHD 1920x1080 60i was trimmed of from the same video. And Then was added to track two, kind of to overlay the track one. Dissolve transitions were added to this clip. Nothing else was used on this project except the time line has numbered chapter marks.
Second audio track has prerecorded MP3 audio with (265kbps bit rate). No effects added to video or audio at all.
This project was exported via Dynamic link to Encore. Encore Project is set to blue ray. I dont have any menus just time line from premiere.
I encore I have transcode settings selected from asset properties as fallows.
DVD NTSC DV High quality 8Mb CBR 1pass, Blu-ray 1920x1080i 29.97 Max quality H.264
And here is the problem - transcoding stops and freezing whole PC during the disk build process or during "Transcode now" option.
The process stops approximately at the point where time line in premiere has exact same video with dissolves on track 2 overlaying track 1. 
Trying to transcode In Encore using AME, and that is freezing at approx the same point. 6 tries and no luck of transcoding.
Any ideas what could cause that.
My PC is quad core CPU Q6600, 8gb or Ram, Nvidia GTX4700, and couple of terabits of HDD.
I never had this problem before this latest patch.
Regards
Andrey

Update.  
After uninstalling the CS5.5 Master Suite and running the Adobe Creative Suite Cleaner Tool I installed the CS5.0 Master Suite and opened up the same project file I was using in CS5.5 and same source video footage.  Premiere CS5.0 detected that the project was from a different version and converted it then it conformed the source video files and all was good.  So I opened up Encore and setup a new project the same as I had done previously with CS5.5 with the same transcoding settings on the dynamically linked sequence files from the Premiere project.  Clicked transcode now and it has been transcoding at 100% CPU usage and 40-60% memory usage it has been transcoding for about 8 hours now.
However, it did have one instance where it did like I had previously described  were the CPU usage sudenly dropped to about 5-10% and the memory maxed out for a good 20 minutes but then pulled out of it and has not had a problem since then.
In Windows Task Manager  it shows that it is Premiere and not Encore that keeps sucking up all the memory when transcoding.
By the way we are using 1080p with a mix of both 23.97fps and 60fps footage shot with a Panasonic HDC-TM700K.
I hope Adobe can figure this out soon for us.  I'm considering switching back to Final Cut Pro when the new version X comes out this month if it works better for me.  Hopefully that will not be necessary.  *hint hint nudge nudge*

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