Transitions stopped working on one clip only.

I'm editing a video consisting of 2 HDV clips, captured from a Canon XH A1.
When I slice and dice clip one, I have no problem with dissolve transitions such as crossfade, or dip to white.
With clip 2, any transitions only show an abrupt change to black for the duration of the transition.
Both clips are on the same timeline.
Rubberbanding opacity between two video tracks works fine.
I've checked the properties of the clips and they're identical.
Wondering if I'm missing something, or maybe I've a corrupted clip file.
Any ideas?
thanks.

More info!
When I switch from mpe hardware mode to software mode, everything works (albeit more rendering required)
Still only a problem on one clip though.
Maybe an MPE issue?

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