TREX Preparation Failed exception

Hello All,
I am facing an issue with TREX wherein the documents not being indexed properly.
The TREX monitor shows all status as green but when I check the 'Display Queue Entries' from
System Admin -> Monitoring -> Knowledge Management -> TREX Monitor, I see a message as:
Return Code = 6500
Return Message = HTTP Status Code 500: Internal Server Error
Document status = Preparation failed.
Please guide me to resolve this.
Awaiting Reply.
Regards,
Ritu

Hello Martin,
Please excuse me for my late reply.
I created a test repository, created an index for it called Test_Index, attached it with a KM Data Source, uploaded 3 .txt files. All these txt files have size within 10 KB.
1. When I search using this Test_Index, it does not return any txt file. There are few indexes, so I selected my index to search.
I could successfully open the text file on the browser.
2. Checked DefaultTrace logs and found exception related to another index. Details are:
TaxonomyNamespaceManager.getChildren: Error because the index with name Rama_test1 is not available. Probably you have to delete old taxonomy data in the taxdata repository - com.sapportals.wcm.WcmException: index with index id Rama_test1 doesn't exist!
But 'Rama_test1' index does exist. It is available when I click on 'Show Options -> Search Scope'
on Search page.
3. We also have an index which is connected to 'Livelink' system.
I get an exception for this, saying - the repository returned no root collection (null): livelink
4. com.sapportals.wcm.repository.IOErrorException: sending PROPFIND to remote server
     at com.sapportals.wcm.repository.ResourceException.fillInStackTrace(ResourceException.java:399)
5. Lastly, I see an exception with severity=fatal saying:
exc: /SalesManual - com.sapportals.wcm.repository.InvalidUriException: Invalid RID: No repository manager found for prefix: /SalesManual
*     at com.sapportals.wcm.repository.ResourceException.fillInStackTrace(ResourceException.java:399)*
Location:  com.sapportals.wcm.service.reporting.walker.HierarchyWalker
Any ideas on these?
Awaiting Reply.
Regards,
Ritu

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         at weblogic.application.internal.flow.ModuleListenerInvoker.prepare(ModuleListenerInvoker.java:199)
         at weblogic.application.internal.flow.DeploymentCallbackFlow$1.next(DeploymentCallbackFlow.java:517)
         at weblogic.application.utils.StateMachineDriver.nextState(StateMachineDriver.java:52)
         at weblogic.application.internal.flow.DeploymentCallbackFlow.prepare(DeploymentCallbackFlow.java:159)
         at weblogic.application.internal.flow.DeploymentCallbackFlow.prepare(DeploymentCallbackFlow.java:45)
         at weblogic.application.internal.BaseDeployment$1.next(BaseDeployment.java:613)
         at weblogic.application.utils.StateMachineDriver.nextState(StateMachineDriver.java:52)
         at weblogic.application.internal.BaseDeployment.prepare(BaseDeployment.java:184)
         at weblogic.application.internal.EarDeployment.prepare(EarDeployment.java:58)
         at weblogic.application.internal.DeploymentStateChecker.prepare(DeploymentStateChecker.java:154)
         at weblogic.deploy.internal.targetserver.AppContainerInvoker.prepare(AppContainerInvoker.java:60)
         at weblogic.deploy.internal.targetserver.operations.ActivateOperation.createAndPrepareContainer(ActivateOperation.java:207)
         at weblogic.deploy.internal.targetserver.operations.ActivateOperation.doPrepare(ActivateOperation.java:98)
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         at weblogic.deploy.internal.targetserver.DeploymentManager.handlePrepare(DeploymentManager.java:250)
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         at java.lang.reflect.Method.invoke(Method.java:597)
         at com.bea.staxb.runtime.internal.util.ReflectionUtils.invokeMethod(ReflectionUtils.java:48)
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         at com.bea.staxb.runtime.internal.UnmarshallerImpl.unmarshal(UnmarshallerImpl.java:65)
         at weblogic.descriptor.internal.MarshallerFactory$1.createDescriptor(MarshallerFactory.java:150)
         at weblogic.descriptor.BasicDescriptorManager.createDescriptor(BasicDescriptorManager.java:323)
         at weblogic.application.descriptor.AbstractDescriptorLoader2.getDescriptorBeanFromReader(AbstractDescriptorLoader2.java:788)
         at weblogic.application.descriptor.AbstractDescriptorLoader2.createDescriptorBean(AbstractDescriptorLoader2.java:409)
         at weblogic.application.descriptor.AbstractDescriptorLoader2.loadDescriptorBeanWithoutPlan(AbstractDescriptorLoader2.java:759)
         at weblogic.application.descriptor.AbstractDescriptorLoader2.loadDescriptorBean(AbstractDescriptorLoader2.java:768)
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         ... 26 more
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         at weblogic.application.internal.flow.ScopedModuleDriver.prepare(ScopedModuleDriver.java:176)
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    >
    <Feb 25, 2013 5:23:59 PM IST> <Warning> <Deployer> <BEA-149004> <Failures were detected while initiating deploy task for application 'XXCHRAddFilterAppl [Version=V2.0]'.>
    <Feb 25, 2013 5:23:59 PM IST> <Warning> <Deployer> <BEA-149078> <Stack trace for message 149004
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         at weblogic.servlet.internal.WebAppModule.prepare(WebAppModule.java:372)
         at weblogic.application.internal.flow.ScopedModuleDriver.prepare(ScopedModuleDriver.java:176)
         at weblogic.application.internal.flow.ModuleListenerInvoker.prepare(ModuleListenerInvoker.java:199)
         at weblogic.application.internal.flow.DeploymentCallbackFlow$1.next(DeploymentCallbackFlow.java:517)
         at weblogic.application.utils.StateMachineDriver.nextState(StateMachineDriver.java:52)
         at weblogic.application.internal.flow.DeploymentCallbackFlow.prepare(DeploymentCallbackFlow.java:159)
         at weblogic.application.internal.flow.DeploymentCallbackFlow.prepare(DeploymentCallbackFlow.java:45)
         at weblogic.application.internal.BaseDeployment$1.next(BaseDeployment.java:613)
         at weblogic.application.utils.StateMachineDriver.nextState(StateMachineDriver.java:52)
         at weblogic.application.internal.BaseDeployment.prepare(BaseDeployment.java:184)
         at weblogic.application.internal.EarDeployment.prepare(EarDeployment.java:58)
         at weblogic.application.internal.DeploymentStateChecker.prepare(DeploymentStateChecker.java:154)
         at weblogic.deploy.internal.targetserver.AppContainerInvoker.prepare(AppContainerInvoker.java:60)
         at weblogic.deploy.internal.targetserver.operations.ActivateOperation.createAndPrepareContainer(ActivateOperation.java:207)
         at weblogic.deploy.internal.targetserver.operations.ActivateOperation.doPrepare(ActivateOperation.java:98)
         at weblogic.deploy.internal.targetserver.operations.AbstractOperation.prepare(AbstractOperation.java:217)
         at weblogic.deploy.internal.targetserver.DeploymentManager.handleDeploymentPrepare(DeploymentManager.java:747)
         at weblogic.deploy.internal.targetserver.DeploymentManager.prepareDeploymentList(DeploymentManager.java:1216)
         at weblogic.deploy.internal.targetserver.DeploymentManager.handlePrepare(DeploymentManager.java:250)
         at weblogic.deploy.internal.targetserver.DeploymentServiceDispatcher.prepare(DeploymentServiceDispatcher.java:159)
         at weblogic.deploy.service.internal.targetserver.DeploymentReceiverCallbackDeliverer.doPrepareCallback(DeploymentReceiverCallbackDeliverer.java:171)
         at weblogic.deploy.service.internal.targetserver.DeploymentReceiverCallbackDeliverer.access$000(DeploymentReceiverCallbackDeliverer.java:13)
         at weblogic.deploy.service.internal.targetserver.DeploymentReceiverCallbackDeliverer$1.run(DeploymentReceiverCallbackDeliverer.java:46)
         at weblogic.work.SelfTuningWorkManagerImpl$WorkAdapterImpl.run(SelfTuningWorkManagerImpl.java:528)
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         at weblogic.j2ee.descriptor.WebAppBeanImpl.setServlets(WebAppBeanImpl.java:1143)
         at sun.reflect.GeneratedMethodAccessor214.invoke(Unknown Source)
         at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
         at java.lang.reflect.Method.invoke(Method.java:597)
         at com.bea.staxb.runtime.internal.util.ReflectionUtils.invokeMethod(ReflectionUtils.java:48)
         at com.bea.staxb.runtime.internal.RuntimeBindingType$BeanRuntimeProperty.setValue(RuntimeBindingType.java:539)
         at com.bea.staxb.runtime.internal.AttributeRuntimeBindingType$QNameRuntimeProperty.fillCollection(AttributeRuntimeBindingType.java:381)
         at com.bea.staxb.runtime.internal.MultiIntermediary.getFinalValue(MultiIntermediary.java:52)
         at com.bea.staxb.runtime.internal.AttributeRuntimeBindingType.getFinalObjectFromIntermediary(AttributeRuntimeBindingType.java:140)
         at com.bea.staxb.runtime.internal.UnmarshalResult.unmarshalBindingType(UnmarshalResult.java:200)
         at com.bea.staxb.runtime.internal.UnmarshalResult.unmarshalDocument(UnmarshalResult.java:169)
         at com.bea.staxb.runtime.internal.UnmarshallerImpl.unmarshal(UnmarshallerImpl.java:65)
         at weblogic.descriptor.internal.MarshallerFactory$1.createDescriptor(MarshallerFactory.java:150)
         at weblogic.descriptor.BasicDescriptorManager.createDescriptor(BasicDescriptorManager.java:323)
         at weblogic.application.descriptor.AbstractDescriptorLoader2.getDescriptorBeanFromReader(AbstractDescriptorLoader2.java:788)
         at weblogic.application.descriptor.AbstractDescriptorLoader2.createDescriptorBean(AbstractDescriptorLoader2.java:409)
         at weblogic.application.descriptor.AbstractDescriptorLoader2.loadDescriptorBeanWithoutPlan(AbstractDescriptorLoader2.java:759)
         at weblogic.application.descriptor.AbstractDescriptorLoader2.loadDescriptorBean(AbstractDescriptorLoader2.java:768)
         at weblogic.servlet.internal.WebAppDescriptor.getWebAppBean(WebAppDescriptor.java:141)
         at weblogic.servlet.internal.WebAppModule.loadDescriptor(WebAppModule.java:1327)
         ... 26 more
    weblogic.application.ModuleException: Unmarshaller failed
         at weblogic.servlet.internal.WebAppModule.createModuleException(WebAppModule.java:1604)
         at weblogic.servlet.internal.WebAppModule.loadDescriptor(WebAppModule.java:1358)
         at weblogic.servlet.internal.WebAppModule.prepare(WebAppModule.java:372)
         at weblogic.application.internal.flow.ScopedModuleDriver.prepare(ScopedModuleDriver.java:176)
         at weblogic.application.internal.flow.ModuleListenerInvoker.prepare(ModuleListenerInvoker.java:199)
         Truncated. see log file for complete stacktrace
    Caused By: weblogic.descriptor.BeanAlreadyExistsException: Bean already exists: "weblogic.j2ee.descriptor.ServletBeanImpl@269fc476(/Servlets[PortletProducerResourceServlet])"
         at weblogic.descriptor.internal.ReferenceManager.registerBean(ReferenceManager.java:231)
         at weblogic.j2ee.descriptor.WebAppBeanImpl.setServlets(WebAppBeanImpl.java:1143)
         at sun.reflect.GeneratedMethodAccessor214.invoke(Unknown Source)
         at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
         at java.lang.reflect.Method.invoke(Method.java:597)
         Truncated. see log file for complete stacktrace
    >
    [05:23:59 PM] #### Deployment incomplete. ####
    [05:23:59 PM] Remote deployment failed (oracle.jdevimpl.deploy.common.Jsr88RemoteDeployer)
    #### Cannot run application XXCHRAddFilterAppl due to error deploying to IntegratedWebLogicServer.
    [Application XXCHRAddFilterAppl stopped and undeployed from Server Instance IntegratedWebLogicServer]
    Thanks,
    Amarnath

    Hi Vik,
    I followed your steps in the mail and I'm getting the same error again ( Expected element 'principal-name@http://xmlns.oracle.com/weblogic/weblogic-web-app' instead of 'externally-defined@http://xmlns.oracle.com/weblogic/weblogic-web-app'):
    [06:45:49 PM] Deploying Application...
    <Mar 5, 2013 6:45:52 PM IST> <Warning> <Munger> <BEA-2156203> <A version attribute was not found in element application in the deployment descriptor in C:\Amarnath\Oracle\myWork\system11.1.1.6.39.62.68\DefaultDomain\servers\DefaultServer\tmp\_WL_user\oracle.applcp.model\f7pg9o/META-INF/application.xml. A version attribute is required, but this version of the Weblogic Server will assume that the JEE5 is used. Future versions of the Weblogic Server will reject descriptors that do not specify the JEE version.>
    <Mar 5, 2013 6:46:25 PM IST> <Error> <J2EE> <BEA-160197> <Unable to load descriptor C:\Amarnath\Oracle\myWork\system11.1.1.6.39.62.68\o.j2ee\drs\XXCHRAddFilterAppl\AddFilterProjEJB.war/WEB-INF/weblogic.xml of module AddFilterProjEJB.war. The error is weblogic.descriptor.DescriptorException: VALIDATION PROBLEMS WERE FOUND
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         at weblogic.descriptor.internal.MarshallerFactory$1.evaluateResults(MarshallerFactory.java:245)
         at weblogic.descriptor.internal.MarshallerFactory$1.evaluateResults(MarshallerFactory.java:231)
         at weblogic.descriptor.internal.MarshallerFactory$1.createDescriptor(MarshallerFactory.java:155)
         at weblogic.descriptor.BasicDescriptorManager.createDescriptor(BasicDescriptorManager.java:323)
         at weblogic.application.descriptor.AbstractDescriptorLoader2.getDescriptorBeanFromReader(AbstractDescriptorLoader2.java:788)
         at weblogic.application.descriptor.AbstractDescriptorLoader2._mergeDescriptors(AbstractDescriptorLoader2.java:579)
         at weblogic.application.descriptor.AbstractDescriptorLoader2.mergeDescriptors(AbstractDescriptorLoader2.java:500)
         at weblogic.application.descriptor.AbstractDescriptorLoader2.mergeDescriptors(AbstractDescriptorLoader2.java:477)
         at weblogic.servlet.internal.WebAppDescriptor.mergeLibaryDescriptors(WebAppDescriptor.java:181)
         at weblogic.servlet.internal.WebAppModule.mergeLibraryDescriptors(WebAppModule.java:1646)
         at weblogic.servlet.internal.WebAppServletContext.mergeLibraryDescriptors(WebAppServletContext.java:2718)
         at weblogic.servlet.internal.WebAppServletContext.mergeLibraryDescriptors(WebAppServletContext.java:2678)
         at weblogic.servlet.internal.WebAppServletContext.<init>(WebAppServletContext.java:416)
         at weblogic.servlet.internal.WebAppServletContext.<init>(WebAppServletContext.java:493)
         at weblogic.servlet.internal.HttpServer.loadWebApp(HttpServer.java:418)
         at weblogic.servlet.internal.WebAppModule.registerWebApp(WebAppModule.java:972)
         at weblogic.servlet.internal.WebAppModule.prepare(WebAppModule.java:382)
         at weblogic.application.internal.flow.ScopedModuleDriver.prepare(ScopedModuleDriver.java:176)
         at weblogic.application.internal.flow.ModuleListenerInvoker.prepare(ModuleListenerInvoker.java:199)
         at weblogic.application.internal.flow.DeploymentCallbackFlow$1.next(DeploymentCallbackFlow.java:517)
         at weblogic.application.utils.StateMachineDriver.nextState(StateMachineDriver.java:52)
         at weblogic.application.internal.flow.DeploymentCallbackFlow.prepare(DeploymentCallbackFlow.java:159)
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         at weblogic.deploy.internal.targetserver.AppContainerInvoker.prepare(AppContainerInvoker.java:60)
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         at weblogic.deploy.internal.targetserver.operations.ActivateOperation.doPrepare(ActivateOperation.java:98)
         at weblogic.deploy.internal.targetserver.operations.AbstractOperation.prepare(AbstractOperation.java:217)
         at weblogic.deploy.internal.targetserver.DeploymentManager.handleDeploymentPrepare(DeploymentManager.java:747)
         at weblogic.deploy.internal.targetserver.DeploymentManager.prepareDeploymentList(DeploymentManager.java:1216)
         at weblogic.deploy.internal.targetserver.DeploymentManager.handlePrepare(DeploymentManager.java:250)
         at weblogic.deploy.internal.targetserver.DeploymentServiceDispatcher.prepare(DeploymentServiceDispatcher.java:159)
         at weblogic.deploy.service.internal.targetserver.DeploymentReceiverCallbackDeliverer.doPrepareCallback(DeploymentReceiverCallbackDeliverer.java:171)
         at weblogic.deploy.service.internal.targetserver.DeploymentReceiverCallbackDeliverer.access$000(DeploymentReceiverCallbackDeliverer.java:13)
         at weblogic.deploy.service.internal.targetserver.DeploymentReceiverCallbackDeliverer$1.run(DeploymentReceiverCallbackDeliverer.java:46)
         at weblogic.work.SelfTuningWorkManagerImpl$WorkAdapterImpl.run(SelfTuningWorkManagerImpl.java:528)
         at weblogic.work.ExecuteThread.execute(ExecuteThread.java:209)
         at weblogic.work.ExecuteThread.run(ExecuteThread.java:178)
    .>
    <Mar 5, 2013 6:46:25 PM IST> <Error> <HTTP> <BEA-101370> <There was a failure when merging library descriptors into the application descriptors for application C:\Amarnath\Oracle\myWork\system11.1.1.6.39.62.68\o.j2ee\drs\XXCHRAddFilterAppl\AddFilterProjEJB.war. Please make sure that the descriptors are valid. The error is VALIDATION PROBLEMS WERE FOUND
    problem: cvc-complex-type.2.4a: Expected element 'principal-name@http://xmlns.oracle.com/weblogic/weblogic-web-app' instead of 'externally-defined@http://xmlns.oracle.com/weblogic/weblogic-web-app' here in element security-role-assignment@http://xmlns.oracle.com/weblogic/weblogic-web-app:<null>>
    <Mar 5, 2013 6:46:28 PM IST> <Error> <Deployer> <BEA-149265> <Failure occurred in the execution of deployment request with ID '1362489351282' for task '0'. Error is: 'weblogic.application.ModuleException: Failed to load webapp: 'hcmCompensation''
    weblogic.application.ModuleException: Failed to load webapp: 'hcmCompensation'
         at weblogic.servlet.internal.WebAppModule.prepare(WebAppModule.java:393)
         at weblogic.application.internal.flow.ScopedModuleDriver.prepare(ScopedModuleDriver.java:176)
         at weblogic.application.internal.flow.ModuleListenerInvoker.prepare(ModuleListenerInvoker.java:199)
         at weblogic.application.internal.flow.DeploymentCallbackFlow$1.next(DeploymentCallbackFlow.java:517)
         at weblogic.application.utils.StateMachineDriver.nextState(StateMachineDriver.java:52)
         Truncated. see log file for complete stacktrace
    Caused By: weblogic.descriptor.DescriptorException: VALIDATION PROBLEMS WERE FOUND
    problem: cvc-complex-type.2.4a: Expected element 'principal-name@http://xmlns.oracle.com/weblogic/weblogic-web-app' instead of 'externally-defined@http://xmlns.oracle.com/weblogic/weblogic-web-app' here in element security-role-assignment@http://xmlns.oracle.com/weblogic/weblogic-web-app:<null>
         at weblogic.descriptor.internal.MarshallerFactory$1.evaluateResults(MarshallerFactory.java:245)
         at weblogic.descriptor.internal.MarshallerFactory$1.evaluateResults(MarshallerFactory.java:231)
         at weblogic.descriptor.internal.MarshallerFactory$1.createDescriptor(MarshallerFactory.java:155)
         at weblogic.descriptor.BasicDescriptorManager.createDescriptor(BasicDescriptorManager.java:323)
         at weblogic.application.descriptor.AbstractDescriptorLoader2.getDescriptorBeanFromReader(AbstractDescriptorLoader2.java:788)
         Truncated. see log file for complete stacktrace
    >
    <Mar 5, 2013 6:46:28 PM IST> <Warning> <Deployer> <BEA-149004> <Failures were detected while initiating deploy task for application 'XXCHRAddFilterAppl [Version=V2.0]'.>
    <Mar 5, 2013 6:46:28 PM IST> <Warning> <Deployer> <BEA-149078> <Stack trace for message 149004
    weblogic.application.ModuleException: Failed to load webapp: 'hcmCompensation'
         at weblogic.servlet.internal.WebAppModule.prepare(WebAppModule.java:393)
         at weblogic.application.internal.flow.ScopedModuleDriver.prepare(ScopedModuleDriver.java:176)
         at weblogic.application.internal.flow.ModuleListenerInvoker.prepare(ModuleListenerInvoker.java:199)
         at weblogic.application.internal.flow.DeploymentCallbackFlow$1.next(DeploymentCallbackFlow.java:517)
         at weblogic.application.utils.StateMachineDriver.nextState(StateMachineDriver.java:52)
         Truncated. see log file for complete stacktrace
    Caused By: weblogic.descriptor.DescriptorException: VALIDATION PROBLEMS WERE FOUND
    problem: cvc-complex-type.2.4a: Expected element 'principal-name@http://xmlns.oracle.com/weblogic/weblogic-web-app' instead of 'externally-defined@http://xmlns.oracle.com/weblogic/weblogic-web-app' here in element security-role-assignment@http://xmlns.oracle.com/weblogic/weblogic-web-app:<null>
         at weblogic.descriptor.internal.MarshallerFactory$1.evaluateResults(MarshallerFactory.java:245)
         at weblogic.descriptor.internal.MarshallerFactory$1.evaluateResults(MarshallerFactory.java:231)
         at weblogic.descriptor.internal.MarshallerFactory$1.createDescriptor(MarshallerFactory.java:155)
         at weblogic.descriptor.BasicDescriptorManager.createDescriptor(BasicDescriptorManager.java:323)
         at weblogic.application.descriptor.AbstractDescriptorLoader2.getDescriptorBeanFromReader(AbstractDescriptorLoader2.java:788)
         Truncated. see log file for complete stacktrace
    >
    [06:46:28 PM] #### Deployment incomplete. ####
    Thanks,
    Amarnath

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    f. Next also on Windows Server 2012, I continued on what was left over.  I did the "Rerun prerequisites check " and no surprise - "All prerequisite checks passed successfully. Click 'Install' to begin installation"!
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    the discussions over the web. Every bit counts!
    Well if this helps you in some way, give me some points to buy beer! I am going to have a drink with Bill, Cheers! 

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