Trim Transparency is not working in Photoshop

I have a few of layers that have transparency, and I want to save them out as Transparent PNGs. For whatever reason when I saved it as a transparent PNG it is exporting it bigger than it should. It doesnt trim them to the non trasparent pixels, instead it renders them out at full size. I used both Save As and Save for Web… commands, and neither are trimming the files. When  I tried File>Scripts>Export Layers To Files…, 5 out of 6 work perfectly when exported as PNG, but only once.  I used layers mask on the layers and I check this last layer multiple times even floodin it with black and then marqueed a random area in white, and it still exports it at canvas size and WONT crop the images to just the visible pixels. Basically it is NOT ollowing the Alpha.
What is going on? I am in Photohosp CS6, and I am experiencing this issue on both MAC OS X and Windows. 

Well it just did it, just not for one of my layers. So you telling all this time I have been exploiting a glitch, that has been working in my favor? lol
This is what I have:
In Flash it looks like this:
The multiple Body parts that are selected all the right sizes the BODY layer is LOCKED!!!!!
All of the OTHER layers are now LOCKED and the body layer is selected, and as you can see the border is WAY TO BIG!!!!!
http://i713.photobucket.com/albums/ww137/macjsus/shot2_zpse6ad91bf.png

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