Trouble with clipping paths and expanding

Hey y'all. Okay, so I have a Illustrator element that uses a clipping path.
Even after I run "Expand Appearance" on it, it's not trimming the art to the bounds of the path.
It's making for difficult to position correctly when copying into Photoshop as a Smart Vector or Shape Layer:
And it isn't correct in After Effects either.

What you are describing is just another example of the very common need to trim artwork (including filled, unfilled, open, and/or closed paths) without wrecking its already-applied Attributes, Appearances.
As has been discussed many many times here, Illustrator simply does not provide that basic functionality...neither by its horribly-designed cutting tools nor through its problematic and caveat-riddled Pathfinders. Expanding a Clipping Path doesn't serve as a workaround for this long-missing functionality; nor does flattening transparency. You can't do it without resorting to the workarounds you've already tried or others that will no doubt be suggested.
Once again:
NONE of Illustrator's cutting tools (Knife, Scissor) can cut across artwork that includes multiple open, unfilled paths. Open unfilled paths are ignored by the Knife cut. The Scissor cannot cut across multiple paths at once.
Illustrator's recently-added, very poorly implemented Eraser tool comes nearest to the needed functionality. It can at least cut multiple unfilled open paths without their becoming converted to unstroked, closed fills. But it unpredictably alters the shapes of remaining portions and has no means by which to accurately control a cutting shape other than rectangular.
This is a prime example (there are others) of how Illustrator confuses and clutters the interface with multiple under-powered tools designed for similar functions, none of which measure up to a single tool properly designed for the same purposes in most other programs.
Pathfinders are riddled with ridiculous caveats. Those which come close to providing the needed functionality are incapable of ommitting the unwanted deadwood and/or wreck strokes by outlining them.
Illustrator needs a feature that allows any given path to be employed as either a selection marquee or a cutting path. And the cutting operation needs to act as expected regarding strokes as well as fills--as common in any other drawing program that does provide the long-missing functionality (most do; Illustator never has).
JET

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    2013-11-07 06:50:02 -0500: Checking extents overflow file.
    2013-11-07 06:50:02 -0500: Checking catalog file.
    2013-11-07 06:50:41 -0500: Missing thread record (id = 5057741)
    2013-11-07 06:50:48 -0500: Checking multi-linked files.
    2013-11-07 06:51:02 -0500: Checking catalog hierarchy.
    2013-11-07 06:51:20 -0500: Invalid directory item count
    2013-11-07 06:51:20 -0500: (It should be 0 instead of 4)
    2013-11-07 06:51:20 -0500: Invalid volume directory count
    2013-11-07 06:51:20 -0500: (It should be 166840 instead of 166841)
    2013-11-07 06:51:20 -0500: Checking extended attributes file.
    2013-11-07 06:51:47 -0500: Checking multi-linked directories.
    2013-11-07 06:52:55 -0500: Checking volume bitmap.
    2013-11-07 06:52:56 -0500: Checking volume information.
    2013-11-07 06:52:56 -0500: Repairing volume.
    2013-11-07 06:52:56 -0500: Missing directory record (id = 5057741)
    2013-11-07 06:52:56 -0500: Look for missing items in lost+found directory.
    2013-11-07 06:53:10 -0500: Rechecking volume.
    2013-11-07 06:53:10 -0500: Checking Journaled HFS Plus volume.
    2013-11-07 06:53:10 -0500: Checking extents overflow file.
    2013-11-07 06:53:10 -0500: Checking catalog file.
    2013-11-07 06:53:16 -0500: Incorrect number of thread records
    2013-11-07 06:53:22 -0500: Checking multi-linked files.
    2013-11-07 06:53:35 -0500: Checking catalog hierarchy.
    2013-11-07 06:53:53 -0500: Invalid directory item count
    2013-11-07 06:53:54 -0500: (It should be 5 instead of 6)
    2013-11-07 06:53:54 -0500: Invalid volume directory count
    2013-11-07 06:53:54 -0500: (It should be 166844 instead of 166842)
    2013-11-07 06:53:54 -0500: Invalid volume file count
    2013-11-07 06:53:54 -0500: (It should be 1056326 instead of 1056321)
    2013-11-07 06:53:54 -0500: Checking extended attributes file.
    2013-11-07 06:54:20 -0500: Checking multi-linked directories.
    2013-11-07 06:55:25 -0500: Checking volume bitmap.
    2013-11-07 06:55:26 -0500: Checking volume information.
    2013-11-07 06:55:26 -0500: Repairing volume.
    2013-11-07 06:58:06 -0500: Rechecking volume.
    2013-11-07 06:58:06 -0500: Checking Journaled HFS Plus volume.
    2013-11-07 06:58:06 -0500: Checking extents overflow file.
    2013-11-07 06:58:07 -0500: Checking catalog file.
    2013-11-07 06:58:12 -0500: Incorrect number of thread records
    2013-11-07 06:58:18 -0500: Checking multi-linked files.
    2013-11-07 06:58:31 -0500: Checking catalog hierarchy.
    2013-11-07 06:58:50 -0500: Invalid volume directory count
    2013-11-07 06:58:50 -0500: (It should be 166844 instead of 166842)
    2013-11-07 06:58:50 -0500: Invalid volume file count
    2013-11-07 06:58:50 -0500: (It should be 1056326 instead of 1056321)
    2013-11-07 06:58:50 -0500: Checking extended attributes file.
    2013-11-07 06:59:17 -0500: Checking multi-linked directories.
    2013-11-07 07:00:22 -0500: Checking volume bitmap.
    2013-11-07 07:00:24 -0500: Checking volume information.
    2013-11-07 07:00:24 -0500: Repairing volume.
    2013-11-07 07:03:03 -0500: Rechecking volume.
    2013-11-07 07:03:03 -0500: Checking Journaled HFS Plus volume.
    2013-11-07 07:03:03 -0500: Checking extents overflow file.
    2013-11-07 07:03:04 -0500: Checking catalog file.
    2013-11-07 07:03:09 -0500: Incorrect number of thread records
    2013-11-07 07:03:15 -0500: Checking multi-linked files.
    2013-11-07 07:03:29 -0500: Checking catalog hierarchy.
    2013-11-07 07:03:47 -0500: Invalid volume directory count
    2013-11-07 07:03:47 -0500: (It should be 166844 instead of 166842)
    2013-11-07 07:03:47 -0500: Invalid volume file count
    2013-11-07 07:03:47 -0500: (It should be 1056326 instead of 1056321)
    2013-11-07 07:03:47 -0500: Checking extended attributes file.
    2013-11-07 07:04:14 -0500: Checking multi-linked directories.
    2013-11-07 07:05:19 -0500: Checking volume bitmap.
    2013-11-07 07:05:20 -0500: Checking volume information.
    2013-11-07 07:05:20 -0500: The volume LaCie could not be repaired after 3 attempts.
    2013-11-07 07:05:21 -0500: Volume repair complete.2013-11-07 07:05:21 -0500: Updating boot support partitions for the volume as required.2013-11-07 07:05:21 -0500: Error: Disk Utility can’t repair this disk. Back up as many of your files as possible, reformat the disk, and restore your backed-up files.2013-11-07 07:05:21 -0500:
    2013-11-07 07:05:21 -0500: Disk Utility stopped repairing “LaCie”: Disk Utility can’t repair this disk. Back up as many of your files as possible, reformat the disk, and restore your backed-up files.
    2013-11-07 07:05:21 -0500:
    2013-11-07 07:09:45 -0500: Disk Utility started.
    2013-11-07 07:11:45 -0500: Preparing to erase : “LaCie”
    2013-11-07 07:11:45 -0500:     Partition Scheme: GUID Partition Table
    2013-11-07 07:11:45 -0500:     1 volume will be erased
    2013-11-07 07:11:45 -0500:         Name        : “LaCie”
    2013-11-07 07:11:45 -0500:         Size        : 999.86 GB
    2013-11-07 07:11:45 -0500:         File system    : Mac OS Extended (Journaled)
    2013-11-07 07:11:45 -0500: Unmounting disk
    2013-11-07 07:11:45 -0500: Erasing
    2013-11-07 07:11:54 -0500: Initialized /dev/rdisk1s2 as a 931 GB HFS Plus volume with a 81920k journal
    2013-11-07 07:11:54 -0500: Mounting disk
    2013-11-07 07:11:54 -0500: Erase complete.
    2013-11-07 07:11:54 -0500:
    2013-11-07 10:38:00 -0500: Disk Utility started.
    2013-11-07 10:38:12 -0500: Verifying volume “LaCie”
    2013-11-07 10:38:12 -0500: Starting verification tool:
    2013-11-07 10:38:14 -0500: Checking file system2013-11-07 10:38:14 -0500: Checking Journaled HFS Plus volume.
    2013-11-07 10:38:14 -0500: Checking extents overflow file.
    2013-11-07 10:38:14 -0500: Checking catalog file.
    2013-11-07 10:38:29 -0500: Checking multi-linked files.
    2013-11-07 10:38:29 -0500: Checking catalog hierarchy.
    2013-11-07 10:38:41 -0500: Checking extended attributes file.
    2013-11-07 10:39:04 -0500: Checking multi-linked directories.
    2013-11-07 10:39:31 -0500: Checking volume bitmap.
    2013-11-07 10:39:32 -0500: Checking volume information.
    2013-11-07 10:39:32 -0500: The volume LaCie appears to be OK.
    2013-11-07 10:39:32 -0500: Repair tool completed:
    2013-11-07 10:39:32 -0500:
    2013-11-07 10:39:32 -0500:

    I just got a call back from the upper level support person at apple care who had been advising me on my trouble with time machine and my LaCie 1 TB FWD. I had sent her much of the same verbiage as I posted here. As some of you have probably figured out, the verdict is that the drive is probably failing. She says this because I have had to do two erase and reformats. She thought that the intermitant problem that I have had with the drive unmounting when my iMac wakes from sleep could be related to the drive failing.
    In the meantime I have a secondary back-up (not using time machine) and the LaCie  1 TB FWD is working for the moment.
    Thanks to all who read all my verbiage.
    And in the meantime, I've learned something. I marked this question as solved. But I'm open to other things to try.
    Message was edited by: njtreehugger minor edits and update

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