Trouble with new ipod 30GB w/video. also trouble w/ itunes

here's the story: i just got a new ipod (the 30 GB with video). i got tired of my little shuffle with no screen.
so, i put my whole itunes library onto the ipod and everything was working fine. i loved it. then, i deleted some items from my itunes library on my laptop because it was taking up needed space on my hard drive, i figured this was fine, since i still have it on my ipod, and i can watch/listen to them anytime i want. But, when i went back later to put some new stuff on my ipod, 2 shows and 2 of my favorite podcast episodes were deleted from the ipod that i had put on before!
-i checked the manual, it said that i need to be in the manual mode instead of itunes/ipod automatically updating the ipod's library. i was transferring stuff manually, but it still got rid of some stuff on it's own.
the music was all still there, but a tv show episode, and 2 of my favorite video podcast episodes were deleted.
-Will this always be a problem everytime I hook it up to my laptop and want to add new stuff to my ipod? I don't even have half of the ipod filled. it says that I have 20Gb of free space.
i want to be able to keep stuff on my ipod that i will delete from my itunes library/hard drive. such as movies, tv shows, my favorite video podcast episodes. But at the same time, I want to be able to add new stuff. Is this Possible?? please help! is the ipod/itunes programmed to delete everything from the ipod that is not in the itunes library????

i chose the option manage music and video manually.

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