Trying to Disk Copy/Clone of MacBook Pro Using Drive Genius 3

I am trying to make a clone or sector-by-sector copy of my main disk (500Gb) of my MacBook Pro (10.6.8)- using Drive Genius 3
My main disk also has a Bootcamp partition.
I am using a 1Tb external HD with 2 partitions - partition 1 is 50Gb and contains Startup utilities and Drive Genius 3.
I am trying to make a disk copy of my main disk and wish to store the copy on partition 2 (950Gb).
I booted up my MacBook using partition 1 of the external HD - opened DG3 and selected 'Duplicate'.
Then under 'Drive' - I selected the main disk of 500Gb - but under 'Destination' - it would not allow me to select partition 2.
The window only showed the 1TB ext. Hd which itself was unselectable.
How do I get my disk copy stored on partition 2?

Do this instead:
Clone using Restore Option of Disk Utility
Open Disk Utility from the Utilities folder.
Select the destination volume from the left side list.
Click on the Restore tab in the DU main window.
Check the box labeled Erase destination.
Select the destination volume from the left side list and drag it to the Destination entry field.
Select the source volume from the left side list and drag it to the Source entry field.
Double-check you got it right, then click on the Restore button.
Destination means the external drive partition. Source means the internal startup drive.

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