TS2529 Missing information on iTunes backup

I'm recently did a backup to iTunes for my iphone4s before upgrading to the new iOS 6.1, but after the restore was completed to the iPhone there were months of notes missing in the app notes. Why can't I go into iCloud , or my iTunes account and just select these months and restore them? I have heard there are 3rd party apps that allow me to do this but would prefer legitimate way? What apps are these?

See TS4338: iTunes for Windows: Troubleshooting missing menus and text in iTunes.
tt2

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