TS3276 Mail activity reports receiving hundreds of messages at a time, but they do not show up in mailboxes. Please help!

This morning the activity monitor on my Mail window twice reported large streams of incoming mail. However, nothing showed up as new mail in any of my mailboxes. Have other's experienced this? Do you know what is going on?
Thank you!

davnxan wrote:
I'm having a wierd problem. I reinstalled OSX and did all the updates. Then I restored all my data from Time machine including my mail.
how exactly did you do that? did you restore Mail from finder? what exactly did you restore?
When I go into mail my folders that were on my computer all show up, but none of the messages are there.
If I look on my HD in user->library->mail->mailboxes and then look in the .mbox files that are there all the emails show up and if I double click on any they open, but when I look in the mailbox from within mail, nothing shows up.

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