TS3622 It even happens when you connect BOTH power cables on a Mac Pro 3,1

I  have a Mac 3,1 and have recently fitted the ATI Radon HD 5870 replacing the old graphics card. (It is one week old)
One monitor is the NEC Spectraview 2690 which is connected to the mini-Display port and the other monitor is the Apple 23" connected to the DVI port.
After I have shut down the Mac Pro at night and restart it the following morning,  two (BOTH) blank screens appears on booting up.
I then have to press and hold the power button to shut down the system and then reboot the sytem and then the screens come up properly for me to log in.
I can then use the computer as normal.
Why does this happen ?
System below running Mountain Lion
System Software Overview:
  System Version:               OS X 10.8 (12A269)
  Kernel Version:                   Darwin 12.0.0
  Boot Volume:                    Macintosh HD
  Boot Mode:                         Normal
   Model Name:                    Mac Pro
  Model Identifier:               MacPro3,1
  Processor Name:               Quad-Core Intel Xeon
  Processor Speed:               3.2 GHz
  Number of Processors:       2
  Total Number of Cores:      8
  L2 Cache (per Processor):   12 MB
  Memory:                              26 GB
  Bus Speed:                         1.6 GHz
  Boot ROM Version:               MP31.006C.B05
  SMC Version (system):          1.25f4
  Serial Number (system):         Xxxxxxxxxxx
  Hardware UUID:                    20D0D8B4-FE08-51EC-850F-A66BFBF9BC3B
ATI Radeon HD 5870:
  Chipset Model:          ATI Radeon HD 5870
  Type:                         GPU
  Bus:                              PCIe
  Slot:                              Slot-1
  PCIe Lane Width:          x16
  VRAM (Total):               1024 MB
  Vendor:                         ATI (0x1002)
  Device ID:                        0x6898
  Revision ID:                    0x0000
  ROM Revision:               113-C0780C-194
  EFI Driver Version:          01.00.436
  Displays:
LCD2690WUXi:
  Resolution:                    1920 x 1200 @ 60 Hz
  Pixel Depth:                    32-Bit Color (ARGB8888)
  Display Serial Number:   83107092YB 
  Main Display:               Yes
  Mirror:                         Off
  Online:                         Yes
  Rotation:                         Supported
Apple Cinema Display:
  Display Type:               LCD
  Resolution:                   1680 x 1050
  Pixel Depth:               32-Bit Color (ARGB8888)
  Mirror:                         Off
  Online:                         Yes
  Rotation:                    Supported

There is no BIOS in OS X. There is only the EFI stored in ROM that is not user modifiable. OS X is probably checking Bay 0 for the boot drive since that is where it should be. It won't check the Tempo drive since it is treated like an external drive. I suggest you open Startup Disk preferences to see if the Tempo device is selected as the boot device. If it isn't, then select it. That will probably shave off a few seconds in the startup time.

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