TV Show sync wipes off all audio.

Running iTunes 7.0.1, with a manually managed music library. However I do automatically sync all Podcasts without any issues.
Yesterday I imported some video files and marked them as TV Shows. I then configured iTunes to automatically sync these files, syncing only the ones that hadn't been seen. It did manage to sync them correctly, but only after wiping the entire audio content off my iPod during the process.
I have managed to restore all of my audio content again, but I've lost all playlists in the process.

Resolved by iTunes update.

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