Two Color Pdf Output Problem - Continued

From yesterday's post, it was determined that my pdfs were in fact two color, but it turns out the printer is taking the individual pdf pages and marrying them up in printer pagination format using Illustrator. Could this be way the black is converting to RGB? What software should he be using?
Thank you,
Tony

Unproper Color Calibration settings can lead to this problem.
tomaxxi
http://indisnip.wordpress.com/

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    Thank you,
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