Two problems with video

Can FCE edit MKV files? or is there a GOOD format converter that anyone would recommend. Most of the ones I have tried (on a PC I have to admit) produce banding and video artefacts.
Second question: All my video plays fine on a PC but much of it has a little extra on a Mac - a DivX logo that keeps appearing in the corner. It doesn't happen on a PC. Why on a Mac and how do I get rid of the thing, or do I have to edit all my my video on a PC to avoid this problem?

So does anyone have an idea on any editor that handles MKV files?
And the DivX guys say it an Apple thing with the DivX logo in the corner. The files is exactly the same as on a PC but that platform doesn't produce the logo, therefore it's an Apple thing. i was hoping to avoid all this "It's not me, it's the other guy's fault" sort of thing. MOST DISAPPOINTING

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