Unable to add or delete bookmarks

I have recently noticed when trying to delete some old bookmarks from Safari (4.0.3) that they return after I close and re-open Safari. I am also unable to add new bookmarks. They appear to be added, however, once I re-open Safari the new bookmarks are no longer there. I have tried to reset Safari, and empty the cache and just about everything else I could think of. I previously had Xmarks, however I uninstalled it prior to updating, but I'm not sure how long I may have been having this bookmarking problem. Any advice?

Thanks Barry,
Already uninstalled the Xmarks program (only add on for safari I installed), reset safari, and trashed com.apple.safari.plist. Are there any other preference files I need to delete because I am still having same problem? After my restart from trashing bookmarks.plist from safari folder, shouldn't it have returned after the restart? There is no bookmark.plist file in safari anymore.
Any more help is still appreciated.

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