Under SL, a 2nd disk partition disappears; re-appears if shutdown and start

Background: MacBook Pro, two+ years old. On day one I partitioned the 100GB drive into three sections for MAC OS, DATA and WINDOWS. Never installed Windows.
Just installed SL upgrade. Had some problems; MAC OS space was insufficient. It took SL a while to decide the WINDOWS partition was the wrong format. (I had forgotten the FAT formatting from two years ago.) SL install went into a loop more than once. Finally had to re-install the original MAC OS and then installed SL, which now seems to be working fine. (This is the short version of four+ hours to install SL.)
But now the DATA partition disappears at random times. It will be displayed on the desktop at startup and then, a while later, no longer be displayed. Disk Utility will show it as greyed out but Disk Utility Verify will report it's fine. If I shutdown and restart, it re-appears on the desktop.
I have used Time Machine since it came out. If the DATA partition is visible, Time Machine will include it in the next backup. If it is not visible, Time Machine will not include it.
My first goal is the get the DATA partition stable and permanently visible if there is something obvious that I can correct.
In studying this problem, I've learned that the MAC OS partition, 48.97 GB, is down to 137.3MB of free space. Is this a possible cause of the DATA partition problem? What other operating symptoms might I be seeing due to insufficient free space?
From reading other posts, it seems I have to re-format the entire disk drive to recover the WINDOWS partition, which is 12.75GB. Is that correct?
If I do a re-format and complete SL install, will Time Machine restore all of the working data?
thanks
Ray

Hi Ray;
Yes, running with only 137.3 MB in your system partition can cause all sorts of problems. I would suggest you get rid of enough of your files to get at least 10 GB free.
Since you are not using the Windows partition that might be a good place to move your photos and music to.
Allan

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