Uninstall of old products while new ones are running

Maybe a little paranoid, but I need to ask. We recently did the parallel upgrade/migration for Messaging from 5.2hf1.25 to JES MS 6.1hf.02 on the same server. So, we have the old version still installed in a different path than the new one. I want to know if it will be safe to uninstall the old one using the uninstall tool, or should I just delete that directory? If use the uninstall tool that came with MS5.2, will it remove anything that both versions could possibly be using (packages/patches)?
What about other iPlanet components like iDA, webserver?

I can't imagine that uninstalling 5.2 would bother 6.x. ditto iDA
When you;re running the uninstaller for iMS, you have the option to preserve the mailstore. If it's still in the same place, you will need to do that.

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