Updated iPhone with photos and most albums are missing

Today I downloaded the latest version of iOS (8.2) and sync'ed up my photo library (about 3600 photos). Now I see that almost all of my albums, about 700 of them, are no longer on the iPhone.
What would cause the albums to be deleted? Almost all of them on in iTunes so it's not as though they're lost, but why would they have been deleted?
BTW, it's a 64GB iPhone 5.

First, thanks for the replies. It's been a little busy so I apologize for the delay. I'm still having problems though and I may have an idea about the problem.
When I connect my iPhone to iTunes the horizontal graph at the bottom of the window shows:
Songs: 162MB
Video: 965MB
Photos: 1.46GB
Books: 72MB
Documents and Data: 135MB
Other: 36GB
Free: 15GB
So, I figure that the reason I couldn't load my music library (~45GB) and all of my photos (~5000 photos) is because of the 36 GB of "Other."
I don't have many apps (only three screens contain all of them), so what is taking up more than half of my 64GB iPhone simply labeled "Other"?
Thanks again for your help.

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