Updates from Mountain Lion 10.8.3 to 10.8.4 on my iMac Intel Core i7 are giving me problems.

I recently updated my Mountain Lion 10.8.3 to 10.8.4 on my iMac Intel Core i7. Now I am experiencing all sorts of problems.
1. It won't recognize my phone: Under the last OS I used to just plug in my phone and it would automatically recognize it and give me a desk icon. Now, nothing. I am forced to use bluetooth, which is so time consuming, to off load my photos. I even tried lauching iPhoto first and then plugging in my smart phone, and it would not recognize it.
2. Clicking on files or folders on the desktop acts as if I have the shift or command key engaged and highlights all the ones I clicked on, instead of just releasing the last file I clicked on when I click on the next file.
3. My mouse keeps disappearing all of a sudden. So I have to keep moving my mouse around until the cursor finally becomes visable.
4. Some applications, when clicked on in the dock, open a new window as if the computer has lost the path as where to find the original except I don't get an error message saying the alias needs to be fixed. It just opens Applications.
These are the most annoying things that are happening since I have upgraded my iMac. Number 1 is the most important thing now as my videos are taking hours to off load.
Any help would be appreciated.

Hi Eric... I restarted my iMac in Safe Mode. It gave me the option of Me or Guest. I chose Me. It started up. I ran Disk Utility and I noticed that the repairs of permissions were focused on my scanner and printer. Nothing else. Restarted. Noticed that the mouse issue is fixed. Yay! Folder issue is fixed. Yay! Application/path finding also seems to be back to normal. Yay!
My Smartphone will still not mount. Disk Utility did not recognize the phone. Going into About This Mac showed me that it can recognize the phone via Bluetooth. Under About This Mac>Hardware>USB, it also sees the phone. So why is it not mounting like before? Or what is the next step? I read those articles you attached in your initial response.
betty

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