Upgraded Hard Drive, now all "on my mac" mail is gone

Yesterday I installed a new hard drive in my macbook. Used my Time Machine backup to restore the new drive. Everything seems to work fine.
When searching for some email today, though, I noticed that all of the (many) emails in the "on my mac" section of Mail is gone.
I think the messages are still in my home/library/mail/mailboxes, but how do I get Mail to recognize them?

Hello and welcome to the Discussions.
This is probably an index problem. Let's force an overall reindexing via the removal of the Envelope Index since you say it is spread across all On My Mac mailboxes. Note the special instructions when forcing the reindexing of IMAP or Exchange accounts in the following:
http://docs.info.apple.com/article.html?path=Mail/3.0/en/14019.html
This will force the reindexing of all the POP mailboxes and all On My Mac mailboxes. With regard to any IMAP accounts if you have any, the practical result of this action of removing the account folder, is that with the IMAP account still set up in the Preferences, Mail will connect to the IMAP server and create a new account folder, and while doing so will index the messages in the mailbox folders of the IMAP account on the server.
Keep me posted.
Ernie

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