Upgrading and Duplicates in iphoto 11

I am having trouble with importing photos and getting duplicates.
I bought a new macbook pro and copied my old iphoto library from my old computer.   I pointed iphoto 11 to my old library and it did an automatic upgrade of the library file.   Next it generated HD thumbnails.    I then went to load some other misc photos from a external drive and I selected everything in a folder and its subfolders, etc.   I was prompted, if I wanted duplicates removed and i checked yes, and do for all future actions.   However, when i do an import it loads all the photos and doesnt remove duplicates before loading into iphoto 11.
Example.  If there are 5 files all called IMG3404.JPEG but in various subfolders of the photo folder, it loads all 5 instead 1.    I know, the duplicates are a result of bad file management over the course of years.   Problem is I have over 30,000 photos and the import will make it 5 times that.
Is there a way I can load photos into iphoto 11 and not load duplicates as the example? 

They are duplicate files that have been replicated over years of backups, etc.   Now trying to consolidate by importing into iphoto, but it brings in each one and doesnt recognize they are duplicates
Each set of files are the same photo and have the same creation and modification dates
Does that help?

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