USB 3 Instability Issues - Windows 8.1 - Windows 8, The USB 3 Stack Is Unstable On Multiple PCs And Many Devices

The USB 3 stack is unstable in Windows 8.1 and Windows 8. I was hoping the upgrade to Windows 8.1 would improve the stability but no.
On two different motherboard systems I have had the same experience with 64 bit Windows 8 Pro and Windows 8.1 Pro compatibility with various USB 3.0 devices and hubs including:
An AFT PRO-57U front panel card-reader/hub, various Anker, Syba multiport hubs, and these are just a few I have tried, there are many more.
Symptoms are the same.
For example: the AFT PRO-57U slots are enumerated correctly as drive letters in Windows 8.1.
Then the drives (the PRO-57U slots) disappear, then reappear, then disappear, and reappear and so on. This happens consistently and the cycle time to disappear/reappear varies from 10 seconds to 10 minutes.
The Windows Device Manager shows the devices appearing and disappearing as enumerated devices. I have tried many trial and error methods to solve this, uninstalling and reinstalling USB motherboard drivers, different cables to the AFT PRO-57U device different
USB 3 ports for the devices and many more...
One of the hubs I bought specifically because it has the latest chip and firmware: Anker® USB 3.0 9-Port Hub + 5V 2.1A Smart Charging Port with 12V 5A Power Adapter [VIA VL812-B2 Chipset and updated Firmware 9081] This hub FAILs to enumerate some external
HDDs and other devices.
To troubleshoot I have tried many things:
I have disabled Windows Power Options, USB Selective Suspend.
I have disabled power options for each and every USB device in Windows Device Manager
I have uninstalled the Asus AI Suite 3 software and the issues remain.
I have tried BIOS settings for Legacy USB devices on and off and the issues remain.
I have tried BIOS setting for xHCI Mode - Auto, Smart Auto, On, Disabled
I have updated to the latest Intel chipset drivers 9.4.0.1026
I have all the latest BIOS, drivers, firmware, devices, - anything that is involved with the USB 3 stack.
Etc. etc. etc...
I have contacted Asus, Gigabyte Intel, AFT, Anker Syba, etc. and they are all finger pointing.
I have tried so many trial and error methods to solve the problem and I have run out of ideas.
It is clearly an unstable USB 3 stack and I am not sure who is responsible although I suspect Intel chipset drivers. 
USB 2 is fine BTW. All devices work correctly when plugged into USB 2 ports.
From what I can tell, the entire USB 3 environment is a problematic P.O.S.
If anyone has any ideas I am willing to try anything I have not already tried.
Thanks,
Michael Downs
P.S.  Here is my system information. I have all the latest BIOS, updates, drivers and etc. for all devices.
ASUS Maximus VI Formula w/ BIOS 1002
Intel Core i7-4770K  BX80646I74770K      
G.Skill Trident X 16GB (2 x 8GB) DDR3 2400 Model F3-2400C10D-16GTX
Samsung 840 Pro 256GB  SSD Seagate Constellation CS ST3000NC002 3TB 7200 RPM 64MB
EVGA GeForce GTX 760 ACX 2GB 256-bit GDDR5  
Corsair Carbide Series 330R Mid-tower Case
Corsair RM850 850W 80 Plus GOLD Certified
Cooler Master Seidon 240M - Liquid CPU Water Cooler
Pioneer 15X BD-R SATA Blu-ray Burner BDR-2208
AFT PRO-57U All-in-one USB 3.0 5.25" Media Card Reader
Then there is a similar system with the exact same USB 3 issues:
Gigabyte - GA-Z77X-UP4TH
Intel i7 3770K
etc.
mdd

Hey, I hope this helps you out a bit... I have had the same issue on my Asus K55A notebook with Win8.1 Pro x64 from the beginning! Thru my extensive research I found something interesting and the possible cause to all this! What I found was that by design
the xHCI Host Controller has virtual HS 2.0 Ports linked to the 3.0 Ports... Enabling compatibility with 2.0 devices ok... What happens is that the xHCI stack is unstable just like you say... The ONLY WAY I was able to fix the problem was by unlocking the
UEFI/BIOS to allow me full access to USB Configurations... I had to disable 2 of the HS ports under the xHCI Controller since I have only 2x 3.0 ports... This allowed 3.0 devices to be enumerated correctly under the xHCI stack and 2.0 devices now were enumerated
under the EHCI 2.0 stack... That's what worked in my case... I'm still digging around for more info about this issue because I find it so odd that no one discovered this when designing xHCI stacks and drivers at MS for Win8/8.1 x64... I hope I shed some light
on this issue... Good luck and keep us posted!
Hi, Sebastian. I have the same problem but i'm getting crazy trying to solve it. Can you help me to unlock the UEFI to access full USB config? and give me some suggestions on how to solve the problem?
My mail is roquen(at)gamail(dot)com
Thanks in advance!

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