User presets and external plug-ins missing after V 2.6 upgrade

I just upgraded to V2.6 and noticed that all my user Presets for Develope and Print Modules have gone missing. It also happened to all the third party plug-ins software. While the software can be re installed, are the missing user presets gone forever? Isn't LR intelligent enough to leave the user presets alone during an upgrade? Doesn't LR back them up like the catalogue files are backed up? How can I prevent this from happening for any future release upgrade? All this is counter productive. Appreciate any suggestions.Thank you.

Dear Ian Lyons
You are spot on, no wonder you are the Community Professional and a member for over four years. Some of my presets are in the Lightroom Preset folder and unchecking the Store Presets with Catalog checkbox revealed the presets and by copying the rest of the presets into the same folder all my presets are now visible and better than before. Gotta go now as it is back to business as usual with nothing missing. I simply love this program!
Thank you very much for the sound advise.

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