Using 2 itunes libraires..

Hello,
I am having a hard time understanding, how to use 2 itunes folders on my macbook..
I have one for my all aac files (for my ipod - on my macbook) and one for all apple lossless (for my stereo system - on external harddrive)
Now, when I buy new cd's I always open itunes with the lossless folder to copy the new cd. I also (before copy) tell itunes that this is the folder (redirect lossless folder). Then press ok and itunes now ask me something like this "want to keep organizing folders....", but what happening is, some lossless albums are now in my aac itunes library.
Now lot's of albums is mixed up now in both libraries
Is it impossible to have 2 libraries? I can't understand it.
Thanks for any help.

hi rob!
When i go to iTunes it recognizes the new ipod but then comes up with a message from microsoft saying the programme has encountered an error and must close.
... please tell me this a new development rather than being the reason for your original question ...
what is your precise itunes version number? to check go "help > about itunes" and wait for the version number to scroll up from the bottom of the screen. for example, mine says "itunes 6.0.4.2".
(we're checking for a possibility related to itunes version 6.0.2.23.)
love, b

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http://support.apple.com/kb/ht4895
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More iTunes frustrations...
As my original hard disk is nearly full, I've installed a second hard drive (let's call it G:); this is where I intend to keep my music files for use by my Squeezebox.
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Second problem: I told iTunes not to convert my WMA
files during setup. This would create AAC copies in
my iTunes folder, and my disc is nearly full. But
iTunes still added the WMA files to its library; and
now whenever I sync with the iPod, iTunes hangs for
about 10 minutes while it works out that it can't
transfer all these WMA files. Is there an easy way
to delete them from iTunes? I do NOT want to have to
go through track-by-track, as there are several
thousand of them.
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Hi Brett,
Thanks very much for the information.
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