Using Aperture with an external Hard Drive and my new camera (Nikon D300s)

I have an older MacBook pro- basically had option upgrade comp or camera- went with the new Nikon D300s... my pro was maxed out so a friend helped me transfer my library to my external Harddrive (had a tra- after transfer of my library looking at only 721mb left (just a few photos)) but here is the issue- we have it set up when i load my cards that they go right to the external- but two things happen- my raw photos show as 'unsupported format' AND I can't figure out how to edit.... seriously so frustrated I am ready to go with a micro-puker computer and photoshop... this is NUTS! any help... o and I run AP 2 and I ain't dumping any more money in apple until they can show me they are working again... this is eating my profits!

Well... I am going to say I am not ashamed to admit that I am not 100% sure. I basically gave my computer to my friend who is a computer guru as I was trying to download my first shoot with my new camera and I got a "not enough memory" message- and kinda freaked out.
I have a WD external HD so it is mac friendly-
I don't know how he moved it-- I know he said when he set it up to transfer it took close to 14 hours as it is USB (I know I can and should get a firewire port for it) - and to be truthful I don't know if it is referenced or managed. I know that I plug in the external and make sure it shows in on my computer then plug in my card reader and when i plug in my CF card... aperture opens and I set up a new project and it saves to the hard drive... yet is still showing on my aperture lib- so I am confused... and of course my "free" apple care ran out 6 months ago so I can't just call them or drive to denver and have them show me the solution... and I need one as I have a HUGE photo job in like 4 days

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