Using Time Machine to transfer Logic and Plugins to a new Mac

Hey there folks,
I'm about to invest in a new Mac Pro to upgrade from my Imac 2010 Quad Core Intel I7.  I just have a question regarding using time machine to restore my settings that were on my Imac to the Mac Pro...
I've heard that time machine backs up everything, but i've also heard that it might not back up things like all my Logic 3rd party plugins (Waves stuff for example).  And i will have to enter in all the serial no's again etc...does anyone know if this is the case?  Will i have to reinstall Logic 9 and all my plugins again?  Or will time machine backup the Applications and plugins so i can use them straight away?
Many thanks!
Sam

Google Pondini's Setup Assistant tips, you will find migrating your settings, data and apps is extremely simple.

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