Using windows program with remote access.

I have to work with a complex electronic medical records program (Allscripts) remotely from home on my Mac. The program is not really Mac friendly. It has to run on Java at home and it requires "right click, left click" operations on the pc that I can't figure out how to make work on the Mac. Any suggestions on how this may be able to work?

Any suggestions on how this may be able to work?'
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