Verifying VS. Repairing Disk Permissions

Do people sometimes experience problems "repairing permissions" - Is it better to verify permissions to see if there is a problem?

Hi Scott!
I've never had a problem running Repair Permissions, and I never run Verify first.
But be aware that you will see the same messages each time you run it.
More info in these links:
Spurious Permissions Errors Using: 10.3.x, authored by Michael Conniff
Spurious Permissions Errors Using: 10.4.x, authored by Michael Conniff
Though corrected with the Tiger 10.4.9 update I think.
ali b

Similar Messages

Is anyone else having problems with Verifying and Repairing Disk permissions?

Hey folks, every time I try to verify and repair disk permissions lately, this is all I get...
Verifying permissions for “Macintosh HD”Group differs on “Library/Printers/InstalledPrinters.plist”; should be 80; group is 0.Permissions differ on “Library/Printers/InstalledPrinters.plist”; should be -rw-rw-rw- ; they are -rw-r--r-- .Warning: SUID file “System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/MacOS/ARDAg ent” has been modified and will not be repaired.
I usually get a long list, then repair it, and it seems to keep things clean.
I'm having trouble with my address book.
When I move the mouse down the bottom of the page my dock doesn't come up right away, sometimes it won't - I have to command tab to go to another program.
So I'm wondering if these are related. Thanks for any help!

Not specifically Sky & Yahoo, but there seem to be quite a few threads with password problems and Yahoo. Is that what you are experiencing. Long thread here:
https://discussions.apple.com/thread/3804431
And a thread here where Gtj56 came up with a fix that worked for him:
https://discussions.apple.com/thread/3800540?start=15&tstart=0

Why can't I verify or repair disk permissions?

In recent weeks, when I have tried to verify or repair disk permissions, I get messages that say (whatever file) has been altered and will not be repaired.

bubbapao wrote:
I just wondered why I could suddenly no longer verify or repair anything.
That is not what you said in an earlier post. you said you got some errors that certain files could not be repaired. That is Not the same as I Can't Repair Anything. Certain files not having the permissions repaired is Normal. It happens on every Mac.

Safe to verify and repair disk permissions with SSD?

Is it safe to verify and repair disk permissions with an SSD installed?

Thanks.
Its just strange, as soon as I repair all my permissions, if I verify them again straight away, there are some that already need re-repairing

Verify/Repair disk permissions

I heard that it's a good idea to verify and repair disk permissions. What does that do? And, when should I do it?
-Eric

Hi, again, Eric.
My, we're curious today, aren't we?
See:
• My "The Repair functions in Disk Utility: what's it all about?" FAQ.
• My "Maintaining Mac OS X" FAQ. It covers my advice on "regular maintenance" and dispels some common "maintenance myths."
Good luck!
Dr. Smoke
Author: Troubleshooting Mac® OS X
Note: The information provided in the link(s) above is freely available. However, because I own The X Lab™, a commercial Web site to which some of these links point, the Apple Discussions Terms of Use require I include the following disclosure statement with this post:
I may receive some form of compensation, financial or otherwise, from my recommendation or link.

Can't repair disk permissions

I just bought a new Mac Mini (2.0 GHz Core Duo w/2 GB of RAM and 320 GB HD) and migrated all of my files over to it from my Time Machine Backup. Over the past two days my two external hard drives have developed permission problems. Yesterday, I booted my computer and my Time Machine backup drive (Western Digital 1 GB) had a small lock on the desktop icon and my permissions were all messed up. I had two versions of my account with "custom" permissions and "Staff" and "Everyone" also with "custom" permissions. I couldn't fix it, so I formatted the drive and now it is working.
Today my other external drive (don't remember maker, 500GB) is doing the same thing (lock on icon, et al), but I don't want to erase it. I tried going to Disk Utility and the verify and repair disk permissions buttons are greyed out. Now, I can't get to my iTunes content on that drive.
Any help would be appreciated.
Thanks,
- Paul

Called Apple Support three times with less than lousy results. My Mac Mini crashed on my first call and it took three Leopard installs before I got back to where I was to begin with.
However, none of the technicians would touch Terminal to fix this issue, but I had found instructions all over the Web. So, I ran some of the commands in Terminal and magically I could fix my permissions on the external HD. I am now repairing permissions on my Macintosh HD and hopefully that will be the end of it.
Phew!

Repair Disk Permissions Unavailable in Disk Utility

I just went to repair the Disk Permissions on one of my 4 internal hard drive and the tabs for Verify & Repair Disk Permissions were grayed out. I checked the other internal hard drives as well as my external drives connected via SATA and Firewire and the tabs are all the same. The only drive that the tabs are available is my internal startup drive. I have a memory that these tabs to verify and repair have always been available on all drives - am I remembering incorrectly? Any ideas? Thanks.

roam:
Repair Permissions is only available to do, on the drive that you are booted into.
I wondered about that, and before my previous post I tested it by launching DU while booted from my internal HDD and connected to an external FW HDD with two partitions, as well as to a USB HDD with my Time Machine backup. If I selected the FW HDD (Manufacturer ID) or either volume on it I could Verify or Repair Disk Permissions, as well as Verify or Repair Disk. It will Repair the TM backup, but not do anything with Disk Permissions. Of course, I am booted from Snow Leopard and did not test this while booted from an earlier OS, but, if I recall correctly, it worked the same way in Tiger and Panther.
cornelius

Verify & Repair Disk Permissions VS. Verify and Repair Disk

Is there a document that explains the differences in these two actions?
Thanks.

Hi Trevor,
Repair Permissions and Verify or Repair disk are two separate processes.
Repair Permissions is explained here.
Verify/Repair Disk is explained here.
-mj
[email protected]

Verifying/Repairing Disk Permissions

I have read in the Forum that one should run Disk Permissions before and after updates, and it doesn't hurt to run it once in a while anyway. But it isn't clear to me when one should verify and when one should repair. After verification, we get the message "Permissions verification complete. Privileges have been verified OR REPAIRED" (capitalization mine). If the verification takes care of repairs, when should one click on the "Repair Disk Permissions"? Thanks.

There's no point in verifying. Always repair. However, repairing permissions need only be done before installing new system updates or after installing third-party software that uses a proprietary installer.
Before installing system updates I recommend doing this:
Repairing the Hard Drive and Permissions
Boot from your OS X Installer disc. After the installer loads select your language and click on the Continue button. When the menu bar appears select Disk Utility from the Installer menu (Utilities menu for Tiger and Leopard.) After DU loads select your hard drive entry (mfgr.'s ID and drive size) from the the left side list. In the DU status area you will see an entry for the S.M.A.R.T. status of the hard drive. If it does not say "Verified" then the hard drive is failing or failed. (SMART status is not reported on external Firewire or USB drives.) If the drive is "Verified" then select your OS X volume from the list on the left (sub-entry below the drive entry,) click on the First Aid tab, then click on the Repair Disk button. If DU reports any errors that have been fixed, then re-run Repair Disk until no errors are reported. If no errors are reported click on the Repair Permissions button. Wait until the operation completes, then quit DU and return to the installer. Now restart normally.
If DU reports errors it cannot fix, then you will need Disk Warrior (4.0 for Tiger, and 4.1 for Leopard) and/or TechTool Pro (4.6.1 for Leopard) to repair the drive. If you don't have either of them or if neither of them can fix the drive, then you will need to reformat the drive and reinstall OS X.

Disk Utility can't Verify Disk Permissions" and "Repair Disk Permissions"

I tried to run "Verify Disk Permissions" and "Repair Disk Permissions" on an external partition, but they all grayed out! "Verify Disk" and "Repair Disk" were fine! The "Owners Enabled" is "Yes". Why they were grayed out ?!
Get Info on this volume showed:
Ownership & Permissions:
You can "Read & Write"
Details:
Owner: admin
Access: "Read & Write"
Ignore ownership on this volume: checked or unchecked STILL grayed out!
Other partitions on the SAME drive are able to do "Very Disk Permissions" and
"Repair Disk Permissions" (as they are NOT grayed out !) The ONLY difference
between the one (CAN'T) and the rest partitions is that one (CAN'T) has
owner by "admin", and the rest partitions (OK to veryify pewrmissions) are owner
by "system". ANY CLUE ?
-DC

The options to verify or repair permissions are only available on a disk with Mac OS X 10.2 or newer installed, and all Mac OS X versions set the owner of the partition containing them to system when installed.
(24684)

Constantly having to repair disk permissions after hanging system

From the time I purchased this I've had ongoing issues with the java, flash, OS updates causing the computer to hang forever. Sometimes I end up having to press the off button because Command Q and Command/Option/Escape won't allow a force quit even after a 20 minute wait. I don't know enough about what's going on behind the boot up to know what's wrong. Here is a copy of my console log and this is exactly what they look like each time after I have gone in and done a disk verify, (says it's okay) and then repair disk permissions. I've had to boot to safe mode 3 times today and repair permissions due to this issue. There is nothing plugged into the computer except the power cord. The OS is up to date per Software Update and the only 3rd party software installed is SKYPE ...
1/25/11 5:45:58 PM SoftwareUpdateCheck[520] Checking for updates
1/25/11 5:45:58 PM storeagent[524] port created
1/25/11 5:46:27 PM com.apple.launchd[1] (com.apple.suhelperd[522]) Exited with exit code: 2
1/25/11 5:46:27 PM com.apple.launchd.peruser.501[88] ([0x0-0x3d03d].SoftwareUpdateCheck[520]) Exited with exit code: 102
1/25/11 8:21:42 PM [0x0-0x52052].com.skype.skype[613] Main starting with pid 613 parent pid 88
1/25/11 8:21:43 PM Skype[613] SkypeApplication::init called
1/25/11 10:56:56 PM com.apple.launchd[1] * launchd[1] has started up. *
1/25/11 11:09:29 PM com.apple.fontd[70] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/25/11 11:09:31 PM com.apple.WindowServer[72] Tue Jan 25 23:09:31 Troy-Lindstroms-MacBook.local WindowServer[72] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/25/11 11:09:32 PM com.apple.fontd[70] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/25/11 11:09:40 PM com.apple.UserEventAgent-LoginWindow[79] ALF error: cannot find useragent 1102
1/25/11 11:09:40 PM com.apple.UserEventAgent-LoginWindow[79] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/25/11 11:09:40 PM com.apple.launchd.peruser.501[90] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/25/11 11:09:42 PM fontd[100] Database content version mismatch (stored(15) != expected(14))
1/25/11 11:09:47 PM com.apple.launchd.peruser.501[90] (com.apple.Kerberos.renew.plist[108]) Exited with exit code: 1
1/25/11 11:10:09 PM com.apple.coreservicesd[44] ThrottleProcessIO: throttling disk i/o
1/25/11 11:10:12 PM com.apple.coreservicesd[44] ThrottleProcessIO: throttling disk i/o
1/25/11 11:10:13 PM com.apple.launchd.peruser.501[90] (com.apple.AirPortBaseStationAgent[110]) Exited: Killed
1/25/11 11:10:14 PM com.apple.loginwindow[22] shutdown: / is busy updating; waiting for lock
1/25/11 11:10:33 PM com.apple.launchd[1] * launchd[1] has started up. *
1/25/11 11:11:24 PM com.apple.UserEventAgent-LoginWindow[81] ALF error: cannot find useragent 1102
1/25/11 11:11:24 PM com.apple.UserEventAgent-LoginWindow[81] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/25/11 11:11:24 PM com.apple.launchd.peruser.501[90] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/25/11 11:11:28 PM fontd[101] Database content version mismatch (stored(15) != expected(14))
1/25/11 11:11:28 PM fontd[101] Failed to open read-only database, regenerating DB
1/25/11 11:11:34 PM com.apple.launchd.peruser.501[90] (com.apple.Kerberos.renew.plist[111]) Exited with exit code: 1
1/25/11 11:11:40 PM com.apple.fontd[101] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/25/11 11:11:48 PM com.apple.fontd[101] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/25/11 11:11:49 PM [0x0-0x9009].com.skype.skype[116] Main starting with pid 116 parent pid 90
1/25/11 11:11:51 PM Skype[116] SkypeApplication::init called
1/25/11 11:38:12 PM com.apple.WindowServer[69] Tue Jan 25 23:38:12 Troy-Lindstroms-MacBook.local WindowServer[69] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/26/11 11:36:13 AM [0x0-0x6d06d].com.skype.skype[666] Main starting with pid 666 parent pid 90
1/26/11 11:36:14 AM Skype[666] SkypeApplication::init called
1/26/11 12:25:04 PM com.apple.launchd.peruser.501[90] ([0x0-0x6d06d].com.skype.skype[666]) Exited: Terminated
1/26/11 5:45:58 PM SoftwareUpdateCheck[867] Checking for updates
1/26/11 5:45:58 PM storeagent[870] port created
1/26/11 5:47:17 PM com.apple.launchd[1] (com.apple.suhelperd[869]) Exited with exit code: 2
1/26/11 5:47:17 PM com.apple.launchd.peruser.501[90] ([0x0-0x92092].SoftwareUpdateCheck[867]) Exited with exit code: 102
1/26/11 8:32:58 PM [0x0-0x11011].com.apple.Safari[143] Wed Jan 26 20:32:58 Troy-Lindstroms-MacBook.local Safari[143] <Error>: unknown error code: invalid drawable
1/26/11 8:32:58 PM [0x0-0x11011].com.apple.Safari[143] Wed Jan 26 20:32:58 Troy-Lindstroms-MacBook.local Safari[143] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/26/11 8:33:10 PM [0x0-0x11011].com.apple.Safari[143] Wed Jan 26 20:33:10 Troy-Lindstroms-MacBook.local Safari[143] <Error>: unknown error code: invalid drawable
1/26/11 8:33:24 PM [0x0-0x11011].com.apple.Safari[143] Wed Jan 26 20:33:24 Troy-Lindstroms-MacBook.local Safari[143] <Error>: unknown error code: invalid drawable
1/26/11 10:48:32 PM com.apple.launchd.peruser.501[90] ([0x0-0x11011].com.apple.Safari[143]) Exited: Terminated
1/26/11 10:49:37 PM com.apple.launchd[1] (com.apple.suhelperd[1047]) Exited with exit code: 2
1/26/11 10:49:44 PM com.apple.launchd.peruser.501[90] (com.apple.AirPortBaseStationAgent[113]) Exited: Killed
1/27/11 11:39:52 PM com.apple.launchd[1] * launchd[1] has started up. *
1/27/11 11:40:14 PM com.apple.launchd.peruser.501[84] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/27/11 11:40:15 PM com.apple.UserEventAgent-LoginWindow[77] ALF error: cannot find useragent 1102
1/27/11 11:40:15 PM com.apple.UserEventAgent-LoginWindow[77] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/27/11 11:40:15 PM SoftwareUpdateCheck[98] Checking for updates
1/27/11 11:40:15 PM com.apple.launchd.peruser.501[84] (com.apple.Kerberos.renew.plist[111]) Exited with exit code: 1
1/27/11 11:40:17 PM storeagent[119] port created
1/27/11 11:40:21 PM com.apple.WindowServer[65] Thu Jan 27 23:40:21 Troy-Lindstroms-MacBook.local WindowServer[65] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/27/11 11:40:27 PM [0x0-0xa00a].com.skype.skype[116] Main starting with pid 116 parent pid 84
1/27/11 11:40:29 PM Skype[116] SkypeApplication::init called
1/27/11 11:41:02 PM SoftwareUpdateCheck[98] Downloading "iTunes"
1/27/11 11:42:35 PM SoftwareUpdateCheck[98] Auto-download of "iTunes" SUCCESSFUL.
1/27/11 11:42:35 PM SoftwareUpdateCheck[98] Launching app
1/27/11 11:43:20 PM com.apple.launchd.peruser.501[84] ([0x0-0x6006].SoftwareUpdateCheck[98]) Exited with exit code: 102
1/28/11 9:51:59 AM com.apple.RemoteUI[589] CoreAnimation: rendering error 501
1/28/11 9:52:15 AM com.apple.RemoteUI[589] HTTP2 Streaming Reads ON
1/28/11 11:31:15 AM com.apple.launchd.peruser.501[84] ([0x0-0x10010].com.apple.Safari[134]) Exited: Terminated
1/28/11 11:42:21 AM com.apple.launchd[1] (com.apple.suhelperd[104]) Exited with exit code: 2
1/28/11 3:49:50 PM com.apple.launchd.peruser.501[84] (com.apple.AirPortBaseStationAgent[113]) Exited: Killed
1/28/11 3:49:50 PM com.apple.launchd.peruser.501[84] ([0x0-0x80080].com.apple.iTunesHelper[764]) Exited: Killed
1/28/11 3:50:10 PM com.apple.launchd.peruser.501[84] (com.apple.Dock.agent[88]) Exit timeout elapsed (20 seconds). Killing
1/28/11 3:53:36 PM com.apple.launchd[1] * launchd[1] has started up. *
1/28/11 3:55:16 PM com.apple.launchd.peruser.501[90] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/28/11 3:55:16 PM com.apple.UserEventAgent-LoginWindow[82] ALF error: cannot find useragent 1102
1/28/11 3:55:16 PM com.apple.UserEventAgent-LoginWindow[82] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/28/11 3:55:25 PM com.apple.launchd.peruser.501[90] (com.apple.Kerberos.renew.plist[111]) Exited with exit code: 1
1/28/11 3:55:27 PM com.apple.WindowServer[72] Fri Jan 28 15:55:27 Troy-Lindstroms-MacBook.local WindowServer[72] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/28/11 3:55:40 PM [0x0-0x8008].com.skype.skype[115] Main starting with pid 115 parent pid 90
1/28/11 3:55:41 PM Skype[115] SkypeApplication::init called
1/28/11 11:40:16 PM SoftwareUpdateCheck[419] Checking for updates
1/28/11 11:40:16 PM storeagent[422] port created
1/28/11 11:40:59 PM com.apple.launchd[1] (com.apple.suhelperd[421]) Exited with exit code: 2
1/28/11 11:40:59 PM com.apple.launchd.peruser.501[90] ([0x0-0x56056].SoftwareUpdateCheck[419]) Exited with exit code: 102
1/29/11 3:02:24 AM quicklookd[551] [QL] 'Creating thumbnail' timed out for '<QLThumbnailRequest /Users/troylindstrom/Downloads/images-30.jpeg>' (Start date: 2011-01-29 03:02:04 -0800)
1/29/11 3:05:11 AM quicklookd[555] [QL] 'Creating thumbnail - cancelled' timed out for '<QLThumbnailRequest /Users/troylindstrom/Downloads/About Downloads.pdf>' (Start date: 2011-01-29 03:03:35 -0800)
1/29/11 3:05:52 AM quicklookd[560] [QL] 'Creating thumbnail' timed out for '<QLThumbnailRequest /Users/troylindstrom/Downloads/About Downloads.pdf>' (Start date: 2011-01-29 03:05:32 -0800)
1/29/11 3:06:44 AM quicklookd[563] [QL] 'Creating thumbnail' timed out for '<QLThumbnailRequest /Users/troylindstrom/Downloads/images-3.jpeg>' (Start date: 2011-01-29 03:06:22 -0800)
1/29/11 6:37:03 AM com.apple.launchd.peruser.501[90] ([0x0-0x86086].com.apple.Preview[708]) Exited: Killed
1/29/11 6:37:03 AM com.apple.launchd.peruser.501[90] ([0x0-0x8a08a].com.apple.systemevents[721]) Exited: Killed
1/29/11 6:37:03 AM com.apple.launchd.peruser.501[90] (com.apple.AirPortBaseStationAgent[113]) Exited: Killed
1/29/11 6:37:13 AM com.apple.launchd[1] * launchd[1] has started up. *
1/29/11 6:37:42 AM com.apple.UserEventAgent-LoginWindow[81] ALF error: cannot find useragent 1102
1/29/11 6:37:42 AM com.apple.UserEventAgent-LoginWindow[81] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/29/11 6:37:42 AM com.apple.launchd.peruser.501[89] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/29/11 6:37:50 AM com.apple.WindowServer[54] Sat Jan 29 06:37:50 Troy-Lindstroms-MacBook.local WindowServer[54] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/29/11 6:37:52 AM com.apple.launchd.peruser.501[89] (com.apple.Kerberos.renew.plist[109]) Exited with exit code: 1
1/29/11 6:38:03 AM [0x0-0x8008].com.skype.skype[113] Main starting with pid 113 parent pid 89
1/29/11 6:38:05 AM Skype[113] SkypeApplication::init called
1/29/11 12:14:57 PM [0x0-0x36036].com.apple.CharacterPaletteIM[330] objc[330]: Class ThinDividerSplitView is implemented in both /System/Library/Input Methods/CharacterPalette.app/Contents/MacOS/CharacterPalette and /System/Library/Input Methods/CharacterPalette.app/Contents/PlugIns/RomanView.CharPalettePlugin/Conte nts/MacOS/RomanView. One of the two will be used. Which one is undefined.
1/29/11 12:43:40 PM [0x0-0x39039].com.apple.CharacterPaletteIM[346] objc[346]: Class ThinDividerSplitView is implemented in both /System/Library/Input Methods/CharacterPalette.app/Contents/MacOS/CharacterPalette and /System/Library/Input Methods/CharacterPalette.app/Contents/PlugIns/RomanView.CharPalettePlugin/Conte nts/MacOS/RomanView. One of the two will be used. Which one is undefined.
1/29/11 6:52:46 PM com.apple.launchd.peruser.501[89] ([0x0-0xf00f].com.apple.Safari[131]) Exited: Terminated
1/29/11 6:52:59 PM com.apple.launchd.peruser.501[89] ([0x0-0x1e01e].com.apple.AddressBook[206]) Exited: Terminated
1/29/11 6:52:59 PM loginwindow[29] * -[NSCFArray objectAtIndex:]: index (1) beyond bounds (1)
1/29/11 6:52:59 PM com.apple.loginwindow[29] 2011-01-29 18:52:59.446 loginwindow[29:107] * -[NSCFArray objectAtIndex:]: index (1) beyond bounds (1)
1/29/11 6:53:14 PM com.apple.launchd.peruser.501[89] (com.apple.AirPortBaseStationAgent[111]) Exited: Killed
1/30/11 9:17:52 AM com.apple.launchd[1] * launchd[1] has started up. *
1/30/11 9:19:51 AM com.apple.fontd[66] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/30/11 9:19:51 AM com.apple.WindowServer[68] Sun Jan 30 09:19:51 Troy-Lindstroms-MacBook.local WindowServer[68] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/30/11 9:19:54 AM com.apple.fontd[66] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/30/11 9:20:00 AM com.apple.UserEventAgent-LoginWindow[78] ALF error: cannot find useragent 1102
1/30/11 9:20:00 AM com.apple.UserEventAgent-LoginWindow[78] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/30/11 9:20:00 AM com.apple.launchd.peruser.501[86] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/30/11 9:20:02 AM fontd[98] Database content version mismatch (stored(15) != expected(14))
1/30/11 9:20:04 AM SoftwareUpdateCheck[94] Checking for updates
1/30/11 9:20:05 AM storeagent[102] port created
1/30/11 9:20:08 AM com.apple.launchd.peruser.501[86] (com.apple.Kerberos.renew.plist[109]) Exited with exit code: 1
1/30/11 9:20:38 AM com.apple.launchd.peruser.501[86] (com.apple.AirPortBaseStationAgent[111]) Exited: Killed
1/30/11 9:20:39 AM com.apple.loginwindow[22] shutdown: / is busy updating; waiting for lock
1/30/11 9:20:44 AM com.apple.launchd[1] (com.apple.suhelperd[101]) Exited with exit code: 2
1/30/11 9:20:45 AM com.apple.launchd.peruser.501[86] ([0x0-0x6006].SoftwareUpdateCheck[94]) Exited with exit code: 102
1/30/11 9:20:49 AM com.apple.coreservicesd[44] ThrottleProcessIO: throttling disk i/o
1/30/11 9:20:55 AM com.apple.coreservicesd[44] ThrottleProcessIO: throttling disk i/o
1/30/11 9:21:16 AM com.apple.launchd[1] * launchd[1] has started up. *
1/30/11 9:22:04 AM com.apple.UserEventAgent-LoginWindow[81] ALF error: cannot find useragent 1102
1/30/11 9:22:04 AM com.apple.UserEventAgent-LoginWindow[81] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/30/11 9:22:04 AM com.apple.launchd.peruser.501[89] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/30/11 9:22:07 AM fontd[101] Database content version mismatch (stored(15) != expected(14))
1/30/11 9:22:07 AM fontd[101] Failed to open read-only database, regenerating DB
1/30/11 9:22:11 AM com.apple.fontd[101] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/30/11 9:22:13 AM com.apple.launchd.peruser.501[89] (com.apple.Kerberos.renew.plist[111]) Exited with exit code: 1
1/30/11 9:22:19 AM com.apple.WindowServer[69] Sun Jan 30 09:22:19 Troy-Lindstroms-MacBook.local WindowServer[69] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/30/11 9:22:26 AM com.apple.fontd[101] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/30/11 9:22:26 AM [0x0-0x9009].com.skype.skype[116] Main starting with pid 116 parent pid 89
1/30/11 9:22:28 AM Skype[116] SkypeApplication::init called
1/30/11 10:33:53 AM com.apple.launchd.peruser.501[89] (com.apple.AirPortBaseStationAgent[113]) Exited: Killed
1/30/11 10:34:02 AM com.apple.launchd[1] * launchd[1] has started up. *
1/30/11 10:34:26 AM com.apple.launchd.peruser.501[86] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/30/11 10:34:26 AM com.apple.UserEventAgent-LoginWindow[79] ALF error: cannot find useragent 1102
1/30/11 10:34:26 AM com.apple.UserEventAgent-LoginWindow[79] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/30/11 10:34:28 AM com.apple.launchd.peruser.501[86] (com.apple.Kerberos.renew.plist[107]) Exited with exit code: 1
1/30/11 10:34:32 AM [0x0-0x8008].com.skype.skype[112] Main starting with pid 112 parent pid 86
1/30/11 10:34:36 AM Skype[112] SkypeApplication::init called
1/30/11 3:37:45 PM com.apple.launchd[1] * launchd[1] has started up. *
1/30/11 3:50:19 PM com.apple.fontd[68] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/30/11 3:50:19 PM com.apple.WindowServer[69] Sun Jan 30 15:50:19 Troy-Lindstroms-MacBook.local WindowServer[69] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/30/11 3:50:21 PM com.apple.fontd[68] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/30/11 3:50:52 PM com.apple.coreservicesd[45] ThrottleProcessIO: throttling disk i/o
1/30/11 3:53:14 PM com.apple.UserEventAgent-LoginWindow[80] ALF error: cannot find useragent 1102
1/30/11 3:53:14 PM com.apple.UserEventAgent-LoginWindow[80] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/30/11 3:53:14 PM com.apple.launchd.peruser.501[90] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/30/11 3:53:15 PM fontd[101] Database content version mismatch (stored(15) != expected(14))
1/30/11 3:53:18 PM com.apple.coreservicesd[45] ThrottleProcessIO: throttling disk i/o
1/30/11 3:53:20 PM com.apple.launchd.peruser.501[90] (com.apple.Kerberos.renew.plist[109]) Exited with exit code: 1
1/30/11 4:00:53 PM com.apple.launchd.peruser.501[90] (com.apple.AirPortBaseStationAgent[111]) Exited: Killed
1/30/11 4:12:07 PM com.apple.launchd[1] * launchd[1] has started up. *
1/30/11 4:12:56 PM com.apple.UserEventAgent-LoginWindow[81] ALF error: cannot find useragent 1102
1/30/11 4:12:56 PM com.apple.UserEventAgent-LoginWindow[81] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/30/11 4:12:56 PM com.apple.launchd.peruser.501[89] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/30/11 4:12:59 PM fontd[101] Database content version mismatch (stored(15) != expected(14))
1/30/11 4:12:59 PM fontd[101] Failed to open read-only database, regenerating DB
1/30/11 4:13:06 PM com.apple.launchd.peruser.501[89] (com.apple.Kerberos.renew.plist[111]) Exited with exit code: 1
1/30/11 4:13:15 PM com.apple.fontd[101] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/30/11 4:13:21 PM com.apple.fontd[101] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/30/11 4:13:21 PM [0x0-0x9009].com.skype.skype[116] Main starting with pid 116 parent pid 89
1/30/11 4:13:23 PM Skype[116] SkypeApplication::init called
1/30/11 5:12:33 PM com.apple.WindowServer[69] Sun Jan 30 17:12:33 Troy-Lindstroms-MacBook.local WindowServer[69] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/30/11 5:12:34 PM com.apple.RemoteUI[169] CoreAnimation: rendering error 501
1/30/11 5:12:46 PM com.apple.launchd.peruser.501[89] ([0x0-0x9009].com.skype.skype[116]) Exited: Terminated
1/30/11 5:12:49 PM com.apple.RemoteUI[169] HTTP2 Streaming Reads ON
1/30/11 5:13:12 PM System Preferences[175] .scriptSuite warning for result type of command 'timedLoad' in suite 'SystemPreferences': the type NSNumber ('long') doesn't match the result Apple event code ('doub').
1/31/11 12:17:59 AM com.apple.launchd[1] (com.apple.aslmanager) Throttling respawn: Will start in 5 seconds
1/31/11 12:54:05 AM com.apple.launchd.peruser.501[89] ([0x0-0x18018].com.apple.Safari[180]) Exited: Terminated
1/31/11 1:31:00 AM com.apple.launchd.peruser.501[89] (com.apple.AirPortBaseStationAgent[113]) Exited: Killed
1/31/11 1:31:24 AM com.apple.launchd[1] * launchd[1] has started up. *
1/31/11 1:33:28 AM com.apple.fontd[66] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/31/11 1:33:29 AM com.apple.WindowServer[67] Mon Jan 31 01:33:29 Troy-Lindstroms-MacBook.local WindowServer[67] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
1/31/11 1:33:31 AM com.apple.fontd[66] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/31/11 1:33:48 AM com.apple.UserEventAgent-LoginWindow[76] ALF error: cannot find useragent 1102
1/31/11 1:33:48 AM com.apple.UserEventAgent-LoginWindow[76] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/31/11 1:33:48 AM com.apple.launchd.peruser.501[86] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/31/11 1:33:50 AM fontd[96] Database content version mismatch (stored(15) != expected(14))
1/31/11 1:33:54 AM com.apple.launchd.peruser.501[86] (com.apple.Kerberos.renew.plist[105]) Exited with exit code: 1
1/31/11 1:34:13 AM com.apple.coreservicesd[44] ThrottleProcessIO: throttling disk i/o
1/31/11 1:34:13 AM com.apple.coreservicesd[44] ThrottleProcessIO: throttling disk i/o
1/31/11 1:44:00 AM com.apple.launchd.peruser.501[86] (com.apple.AirPortBaseStationAgent[107]) Exited: Killed
1/31/11 1:44:10 AM com.apple.launchd[1] * launchd[1] has started up. *
1/31/11 1:44:43 AM com.apple.launchd.peruser.501[86] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
1/31/11 1:44:43 AM fontd[95] Database content version mismatch (stored(15) != expected(14))
1/31/11 1:44:43 AM fontd[95] Failed to open read-only database, regenerating DB
1/31/11 1:44:44 AM com.apple.UserEventAgent-LoginWindow[79] ALF error: cannot find useragent 1102
1/31/11 1:44:44 AM com.apple.UserEventAgent-LoginWindow[79] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
1/31/11 1:44:45 AM com.apple.launchd.peruser.501[86] (com.apple.Kerberos.renew.plist[108]) Exited with exit code: 1
1/31/11 1:44:45 AM com.apple.fontd[95] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/31/11 1:44:57 AM com.apple.fontd[95] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
1/31/11 1:44:58 AM [0x0-0x8008].com.skype.skype[112] Main starting with pid 112 parent pid 86
1/31/11 1:45:00 AM Skype[112] SkypeApplication::init called
1/31/11 2:00:28 AM com.apple.launchd[1] (com.apple.suhelperd[141]) Exited with exit code: 2
Can anyone see the issue or tell me what I need to do to fix this thing???

Which MacBook model? Did it come with OSX 10.6 or did you upgrade it?

Need advice on Repairing Disk Permissions...

I need some input from those who know how to Repair Disk Permissions (under Disk Utility, for those who don't know).
Basically, I lost a TON of my Access and Privileges on my G4 recently--which I really only noticed after iTunes would no longer let me import anything (no matter how many times I tried changing the Ownership & Permissions on my Music folder's Info section)--which, I might add, I suffered due to a virus caused by Limewire. As had been suggested to me, I Verified Disk Permissions, and saw that I had a TON of problems listed on my startup HD. So I'm now seeking ways to repair them.
Now, the most obvious way is using the Repair Disk Permissions program (which I've actually never had to use before). However, under OS10.3.9, when I select the Repair Disk Permissions on Disk Utility, in listing all my Drives available, it actually shows the drive in 2 formats/pictures:
1) the actual technical name/manufactor model/GB size of the drive (on top), and
2) the Desktop name and Icon picture of the Drive as it appears on my desktop.
This confuses me: as you can guess, the startup Drive in question is only partioned as one. So on Disk Utility, which of these 2 pictured drives do I have to highlight and Repair Disk Permissions to (i.e. 19GB Maxtor32049 Vs. 'HAL')?
Also, for those of you who have used other means (programs) to change Disk Permissions, which would you recommend? For example, I got a program from Versiontracker called BatCHmod, but I don't know if something like it is any safer than just using Repair Disk Permissions. Because unfortunately, I'm running out of room on my disk, and don't have nearly enough space on my other drive to hope to back the whole Drive up to.
Please help!!!

Hi phasmatrope!
TO REPAIR PERMISSIONS ON THE STARTUP DISK
1.Open Disk Utility, located in Applications/Utilities, and select the startup disk HAL, in the left column.
2.Click First Aid.
3.Click Verify Disk Permissions to test permissions or Repair Disk Permissions to test and repair permissions. (I never "Verify". Just run "Repair".)
Rerun RP until the only message it reports is:
"We are using special permissions for the file or directory ./System/Library/Filesystems/cd9660.fs/cd9660.util.
New permissions are 33261"
This is a status message and not a cause for concern. You may safely ignore it.
Or these:
"We are using a special uid for the file or directory ./private/var/at/jobs. New uid is 1"
"We are using a special uid for the file or directory ./private/var/at/spool. New uid is 1"
Again, these are status messages, which appeared after Security Update 2005-001.
There may be others that you can ignore. Complete lists at link below.
Spurious Permissions Errors In 10.3.x
When "Repair Permissions" is complete. Quit "Disk Utility".
Good Luck!
ali b

Keep having to 'Repair Disk permissions'.

My MBP (2.53 GHZ Intel Core i5, running 10.6.8) keeps running slow, and only improves after Repairing Disk Permissions. I had to run this again this morning - and I'd only ran Permissions repair two days ago! This is what I got;
'Repairing permissions for “Macintosh HD”
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/dt.jar", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/dt.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jce.jar", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jce.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jconsole.jar ", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jconsole.jar ".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/management-a gent.jar", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/management-a gent.jar".
User differs on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib", should be 95, user is 0.
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/dt.jar", should be lrwxr-xr-x , they are -rw-r--r-- .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/dt.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/jce.jar", should be lrwxr-xr-x , they are -rw-r--r-- .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/jce.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/management- agent.jar", should be lrwxr-xr-x , they are -rw-r--r-- .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/management- agent.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/security/bl acklist", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/security/bl acklist".
User differs on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Libraries", should be 95, user is 0.
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Libraries".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle", should be drwxr-xr-x , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle/Contents/Resources/Java/deploy.jar", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle/Contents/Resources/Java/deploy.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle/Contents/Resources/Java/libdeploy.jnilib", should be -rwxr-xr-x , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Resources/JavaPlugin Cocoa.bundle/Contents/Resources/Java/libdeploy.jnilib".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Home/lib/security/cacerts", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Home/lib/security/cacerts".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Resources/Java/deploy.jar", should be -rw-r--r-- , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Resources/Java/deploy.jar".
Permissions differ on "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Resources/Java/libdeploy.jnilib", should be -rwxr-xr-x , they are lrwxr-xr-x .
Repaired "System/Library/Frameworks/JavaVM.framework/Versions/A/Resources/Deploy.bundle/ Contents/Resources/Java/libdeploy.jnilib".
Warning: SUID file "System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/MacOS/ARDAg ent" has been modified and will not be repaired.
Permissions repair complete'
The other day the list was probably 3 times this length, often ending with '...but they are 80'.
Any ideas?
Thanks

Have you run Repair Disk?
http://support.apple.com/kb/TS1417
Have you checked SMART status?
Check the S.M.A.R.T. status on your HD:Applications > Utilities > Disk Utility > in the panel at left, selectthe first item in the list/your HD mechanism>look at the bottom of the mainwindow next to S.M.A.R.T. status and see if it says “Verified” or somethingmore ominous like “Failing.”
Have you run background maintenance scripts?
http://docs.info.apple.com/article.html?artnum=107388
Have you checked in Activity Monitor to see if any processes are using a high ammount of CPU?
Sometimes a process can run amok and use more of the CPU than it should, potentially causing a slowdown and/or heat issues and/or other issues. To check on this, first use your Mac as you normally would, the longer the better (checking this right after starting up may not show you anything). After you’ve used your Mac for awhile (again, the longer the better), go to Applications > Utilities > open Activity Monitor > in the top menu at right, select All Processes in the drop downmenu > click on the column heading titled % CPU (this will update continuously, showing the percentage each process is using) > toward the bottom left of the window, click on CPU (this will show % Idle, which will also tell you how much of the CPU is being used).
Have you done an SMC Reset?
http://support.apple.com/kb/HT3964
And 4GB used, 2GB free btw...
By chance is it referring to RAM usage?

Repair disk permissions.SUID issue- Unable to get some applications to load

I need some help in repairing disk permissions ...It is affecting an application I am trying to install (1Password) in which I cannot due to applications being run by user = root.
Below is my disk verification log:
I would appreciate someone walking me through this SUID issue.
I cannot install 1Password app as it is my understanding that the user Root will not allow these permissions.
here is my Disk Verification Log;
Verify permissions for “Hard Disk”
Warning: SUID file "usr/libexec/load_hdi" has been modified and will not be repaired.
Warning: SUID file "System/Library/PrivateFrameworks/DiskManagement.framework/Versions/A/Resources /DiskManagementTool" has been modified and will not be repaired.
Warning: SUID file "System/Library/PrivateFrameworks/DesktopServicesPriv.framework/Versions/A/Reso urces/Locum" has been modified and will not be repaired.
Warning: SUID file "System/Library/PrivateFrameworks/Install.framework/Versions/A/Resources/runner " has been modified and will not be repaired.
Permissions differ on "private/var/log/secure.log", should be -rw------- , they are -rw-r----- .
Warning: SUID file "System/Library/PrivateFrameworks/Admin.framework/Versions/A/Resources/readconf ig" has been modified and will not be repaired.
Warning: SUID file "System/Library/PrivateFrameworks/Admin.framework/Versions/A/Resources/writecon fig" has been modified and will not be repaired.
Warning: SUID file "usr/libexec/authopen" has been modified and will not be repaired.
Warning: SUID file "System/Library/CoreServices/Finder.app/Contents/Resources/OwnerGroupTool" has been modified and will not be repaired.
Warning: SUID file "System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/MacOS/ARDAg ent" has been modified and will not be repaired.
Group differs on "Library/PreferencePanes", should be 0, group is 80.
Permissions differ on "Library/PreferencePanes", should be drwxr-xr-x , they are drwxrwxr-x .
ACL found but not expected on "Applications/Utilities".
ACL found but not expected on "Applications".
ACL found but not expected on "Library".
ACL found but not expected on "Library".
Permissions verification complete

Hi gmckay,
The "Waring:SUID file..." messages are only warning message and are not a concern. The SUID bit is supposed to be set on those file. This is a glitch in the installer program- that does not update the installer database with the correct SHA1 digest for those files. The secure.log entry is a glitch in the newsyslog.conf file that sets the permissions on the secure.log less permissive than those recorded in the installer database. The ACL warning messages are caused by another glitch in the installer database. What concerns me are the double ACL messages for "LIbrary". Is this a typo?

Repair Disk Permissions: is it a safe operation ?

Hello,
I'm preparing for the 101 course and, reading about the Verify/Repair disk permissions utility, I wanted to test it on my mac.
I launched the verification on it and I see "lot" of unexpected entries (see below):
Verifying permissions for “Macintosh HD”
Permissions differ on “System/Library/User Template/ar.lproj”; should be drwxr-xr-x ; they are drwx------ .
User differs on “usr/share/collabd/coreclient/public/locales/zh_CN.lproj”; should be 94; user is 0.
Group differs on “usr/share/collabd/coreclient/public/locales/zh_CN.lproj”; should be 94; group is 0.
User differs on “usr/share/collabd/webauthd”; should be 94; user is 221.
Group differs on “usr/share/collabd/webauthd”; should be 94; group is 221.
User differs on “usr/share/collabd/webauthd/locales”; should be 94; user is 221.
Group differs on “usr/share/collabd/webauthd/locales”; should be 94; group is 221.
User differs on “usr/share/collabd/webauthd/locales/zh_CN.lproj”; should be 221; user is 0.
Group differs on “usr/share/collabd/webauthd/locales/zh_CN.lproj”; should be 221; group is 0.
Group differs on “Library/Java”; should be 0; group is 80.
Permissions differ on “Library/Java”; should be drwxr-xr-x ; they are drwxrwxr-x .
Permissions differ on “System/Library/User Template/cs.lproj/Pictures/iChat Icons”; should be lrwxrwxrwx ; they are lrwxr-xr-x .
Permissions differ on “System/Library/User Template/hu.lproj/Pictures/iChat Icons”; should be lrwxrwxrwx ; they are lrwxr-xr-x .
Permissions differ on “System/Library/User Template/tr.lproj/Pictures/iChat Icons”; should be lrwxrwxrwx ; they are lrwxr-xr-x .
User differs on “usr/share/collabd/coreclient/locales/zh_CN.lproj”; should be 94; user is 0.
Group differs on “usr/share/collabd/coreclient/locales/zh_CN.lproj”; should be 94; group is 0.
Permissions differ on “usr/share/devicemgr/frontend/admin/zh_TW.lproj/app/javascript.js”; should be lrwxrwxrwx ; they are lrwxr-xr-x .
Permissions differ on “usr/share/devicemgr/frontend/admin/zh_CN.lproj/app/javascript.js”; should be lrwxrwxrwx ; they are lrwxr-xr-x .
Permissions differ on “usr/share/devicemgr/frontend/admin/ru.lproj/app/javascript.js”; should be lrwxrwxrwx ; they are lrwxr-xr-x .
Permissions differ on “usr/share/devicemgr/frontend/admin/ko.lproj/app/javascript.js”; should be lrwxrwxrwx ; they are lrwxr-xr-x .
Permissions differ on “usr/share/devicemgr/frontend/admin/nl.lproj/app/javascript.js”; should be lrwxrwxrwx ; they are lrwxr-xr-x .
Permissions differ on “usr/share/devicemgr/frontend/admin/it.lproj/app/javascript.js”; should be lrwxrwxrwx ; they are lrwxr-xr-x .
Permissions differ on “usr/share/devicemgr/frontend/admin/es.lproj/app/javascript.js”; should be lrwxrwxrwx ; they are lrwxr-xr-x .
Permissions differ on “usr/share/devicemgr/frontend/admin/fr.lproj/app/javascript.js”; should be lrwxrwxrwx ; they are lrwxr-xr-x .
Permissions differ on “usr/share/devicemgr/frontend/admin/de.lproj/app/javascript.js”; should be lrwxrwxrwx ; they are lrwxr-xr-x .
Permissions differ on “usr/share/devicemgr/frontend/admin/ja.lproj/app/javascript.js”; should be lrwxrwxrwx ; they are lrwxr-xr-x .
Group differs on “Library/Documentation/Applications/iTunes/Acknowledgements.rtf”; should be 0; group is 80.
Permissions differ on “Library/Documentation/Applications/iTunes/Acknowledgements.rtf”; should be -rw-r--r-- ; they are -rw-rw-r-- .
Group differs on “Library/Documentation/iPod/Acknowledgements.rtf”; should be 0; group is 80.
Permissions differ on “Library/Documentation/iPod/Acknowledgements.rtf”; should be -rw-r--r-- ; they are -rw-rw-r-- .
Group differs on “.DS_Store”; should be 80; group is 0.
Permissions differ on “.DS_Store”; should be -rw-rw-r-- ; they are -rw-r--r-- .
User differs on “Applications/.DS_Store”; should be 0; user is 501.
Permissions differ on “Applications/.DS_Store”; should be -rw-rw-r-- ; they are -rw-r--r-- .
Group differs on “Library/Preferences/com.apple.alf.plist”; should be 80; group is 0.
ACL found but not expected on “private/var/root”
ACL found but not expected on “private/var/root/Library”
ACL found but not expected on “private/var/root/Library/Preferences”
Permissions verification complete
It seems to me that these are all related to system files, things that weren't changed by third-party applications or by me.
The question are:
- why an untouched system would have errors in the permissions ?
- is it safe, since I haven't got until now problems with permissions on that os, to repair these errors or it's better to leave everything as it is now ?
Ciao,
Nicola

Hello Nicola,
You raise a touchy area for discussion...some users on here are very opposed to repairing permissions, others are strongly in favor of repairing permissions before and after software installation.
The permission statements you see do not generally adversely affect the system but they are not the permissions disk utility has been told to expect. Those may be artifacts from the installation process and why we have been told in the past to always repair permissions after installing/updating the operating system.
Since you ran verification, if you run repair you will end up cleaning up a lot of this "discrepancies" with what disk utility wants to see.
Repair permissions is safe, and I tend to use it every time I upgrade or install software.
Ralph

When I repair disk permissions I get the following:Repairing permissions for "MacIntosh HD" Determining correct file permissions. Permissions differ on ./Library/Widgets, should be drwxr-xr-x , they are drwxrwxr-x Owner and group corrected on ./Library/W

Repairing permissions for “MacIntosh HD”
Determining correct file permissions.
Permissions differ on ./Library/Widgets, should be drwxr-xr-x , they are drwxrwxr-x
Owner and group corrected on ./Library/Widgets
Permissions corrected on ./Library/Widgets
Permissions differ on ./System/Library/User Template, should be drwx------ , they are drwxr-xr-x
Owner and group corrected on ./System/Library/User Template
Permissions corrected on ./System/Library/User Template
Group differs on ./usr/bin/fetchmail, should be 0, group is 6
Permissions differ on ./usr/bin/fetchmail, should be -rwxr-xr-x , they are -rwxr-sr-x
Owner and group corrected on ./usr/bin/fetchmail
Permissions corrected on ./usr/bin/fetchmail
Permissions differ on ./usr/lib/php/build/Makefile.global, should be -r--r--r-- , they are -r-xr-xr-x
Owner and group corrected on ./usr/lib/php/build/Makefile.global
Permissions corrected on ./usr/lib/php/build/Makefile.global
Permissions differ on ./usr/lib/php/build/acinclude.m4, should be -r--r--r-- , they are -r-xr-xr-x
Owner and group corrected on ./usr/lib/php/build/acinclude.m4
Permissions corrected on ./usr/lib/php/build/acinclude.m4
Permissions differ on ./usr/lib/php/build/mkdep.awk, should be -r--r--r-- , they are -r-xr-xr-x
Owner and group corrected on ./usr/lib/php/build/mkdep.awk
Permissions corrected on ./usr/lib/php/build/mkdep.awk
Permissions differ on ./usr/lib/php/build/phpize.m4, should be -r--r--r-- , they are -r-xr-xr-x
Owner and group corrected on ./usr/lib/php/build/phpize.m4
Permissions corrected on ./usr/lib/php/build/phpize.m4
Permissions differ on ./usr/lib/php/build/scan_makefile_in.awk, should be -r--r--r-- , they are -r-xr-xr-x
Owner and group corrected on ./usr/lib/php/build/scan_makefile_in.awk
Permissions corrected on ./usr/lib/php/build/scan_makefile_in.awk
Permissions differ on ./usr/lib/system/libmathCommon.A.dylib, should be -r-xr-xr-x , they are -rwxr-xr-x
Owner and group corrected on ./usr/lib/system/libmathCommon.A.dylib
Permissions corrected on ./usr/lib/system/libmathCommon.A.dylib
Permissions differ on ./usr/libexec/dumpemacs, should be -r-sr-xr-x , they are -r-xr-xr-x
Owner and group corrected on ./usr/libexec/dumpemacs
Permissions corrected on ./usr/libexec/dumpemacs
Permissions repair complete
The privileges have been verified or repaired on the selected volume
Then I sometimes get the brown screen that states,You must re-start your computer.
I have already zeroed out the hard drive and re-installed Panther and the upgrade Tiger disc.
I repair permissions using the Tiger disc upgrade.
Can anyone help me with this??

> I repair permissions using the Tiger disc upgrade.
One thing to note... When running Repair Disk Permissions, it is best to run it while started up normally, from your normal startup disk, not from a Mac OS X installation disc. The only time you should run it while started up from an installation disc is if some problem is preventing you from starting up normally. OTOH, Repair Disk can only be used when starting up from a different disk (such as an installation disc).
So, I would start up normally, run Disk Utility, and use Repair Disk Permissions on your normal startup disk.
NOTE: Repair Disk Permissions often gives alerts messages that can be ignored. They are more "informational," not serious errors.
http://support.apple.com/kb/TS1448
You should still run it periodically. When you run it, what needs to be repaired has been repaired; consider the rest of it an FYI. I've never experience a problem, where a Repair Disk Permissions message actually caused a problem. But, if you ever get an error while running Repair Disk (or Verify Disk), that is usually a serious problem.

Verifying VS. Repairing Disk Permissions

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