Version number for GPO's not in sync with the version number for GPO's on the Baseline domain controller

Hi
I accidentally removed one of our domain controller's hyper-v image (DC-02) from the hyper-v manager and to bring it back online launched a new virtual machine using the same virtual hard drive. This brought back the domain controller machine and I set the
original IP address to the same assuming that everything would just working fine.
Sadly, that wasn't the case as when I tried to open the group policy manager on that machine I started getting "Access is denied" error. I was then presented with an option to open the group policy manager with the first available DC which I did
and was able to open it with showing the same machine as the baseline domain controller under the status tab (DC-01 is actually the baseline DC). I then clicked Detect now and noticed it was showing 1 DC under replication in progress with problems in GPO version.
I then did the same thing on the primary DC (DC-01) and even there it was showing this only (images attached).
So I started exploring over the internet going through various articles but couldn't find a solution which I could apply without worrying about corrupting something somewhere. I also went to the SYSVOL folder on both the DC's to check the version number
in GPT.ini files which are mentioned below:
\\CC-DC01\sysvol\cloudchowk.lab\Policies\{6AC1786C-016F-11D2-945F-00C04fB984F9}
[General]
Version=3
\\CC-DC01\sysvol\cloudchowk.lab\Policies\{31B2F340-016D-11D2-945F-00C04FB984F9}
[General]
Version=5439513
\\cc-dc02\SYSVOL\cloudchowk.lab\Policies\{6AC1786C-016F-11D2-945F-00C04fB984F9}
[General]
Version=3
\\cc-dc02\SYSVOL\cloudchowk.lab\Policies\{31B2F340-016D-11D2-945F-00C04FB984F9}
[General]
Version=5308439
Could anyone please help me sort this out? I am no system admin and whatever knowledge I have of setting up DC, AD etc is from following one article or the other over the internet.
Regards
Sajat Jain

Hi
Apologies for responding late. I followed through all the points mentioned by Frank and even did a non-authoritative restore synchronization but still no luck.
I am attaching the output from the dcdiag /q and the from the event viewer after doing to non-authoritative restore synchronization.
DCDIAG /Q
There are warning or error events within the last 24 hours after the
SYSVOL has been shared. Failing SYSVOL replication problems may cause
Group Policy problems.
......................... CC-DC03 failed test DFSREvent
Unable to connect to the NETLOGON share! (\\CC-DC03\netlogon)
[CC-DC03] An net use or LsaPolicy operation failed with error 67,
The network name cannot be found..
......................... CC-DC03 failed test NetLogons
An error event occurred. EventID: 0x0000164A
Time Generated: 01/18/2015 17:52:17
Event String:
The Netlogon service could not create server share C:\Windows\SYSVOL\sysvol\cloudchowk.lab\SCRIPTS. The following error occurred:
An error event occurred. EventID: 0x0000164A
Time Generated: 01/18/2015 17:54:12
Event String:
The Netlogon service could not create server share C:\Windows\SYSVOL\sysvol\cloudchowk.lab\SCRIPTS. The following error occurred:
An error event occurred. EventID: 0x00000422
Time Generated: 01/18/2015 17:54:41
Event String:
The processing of Group Policy failed. Windows attempted to read the file \\cloudchowk.lab\sysvol\cloudchowk.lab\Policies\{31B2F340-016D-11D2-945F-00C04FB984F9}\gpt.ini from a domain controller and was not successful. Group Policy settings may not be applied until this event is resolved. This issue may be transient and could be caused by one or more of the following:
An error event occurred. EventID: 0x00000422
Time Generated: 01/18/2015 17:55:42
Event String:
The processing of Group Policy failed. Windows attempted to read the file \\cloudchowk.lab\sysvol\cloudchowk.lab\Policies\{31B2F340-016D-11D2-945F-00C04FB984F9}\gpt.ini from a domain controller and was not successful. Group Policy settings may not be applied until this event is resolved. This issue may be transient and could be caused by one or more of the following:
An error event occurred. EventID: 0x00000422
Time Generated: 01/18/2015 17:59:41
Event String:
The processing of Group Policy failed. Windows attempted to read the file \\cloudchowk.lab\sysvol\cloudchowk.lab\Policies\{31B2F340-016D-11D2-945F-00C04FB984F9}\gpt.ini from a domain controller and was not successful. Group Policy settings may not be applied until this event is resolved. This issue may be transient and could be caused by one or more of the following:
An error event occurred. EventID: 0x00000422
Time Generated: 01/18/2015 18:04:42
Event String:
The processing of Group Policy failed. Windows attempted to read the file \\cloudchowk.lab\sysvol\cloudchowk.lab\Policies\{31B2F340-016D-11D2-945F-00C04FB984F9}\gpt.ini from a domain controller and was not successful. Group Policy settings may not be applied until this event is resolved. This issue may be transient and could be caused by one or more of the following:
An error event occurred. EventID: 0x0000164A
Time Generated: 01/18/2015 18:05:10
Event String:
The Netlogon service could not create server share C:\Windows\SYSVOL\sysvol\cloudchowk.lab\SCRIPTS. The following error occurred:
An error event occurred. EventID: 0x00000422
Time Generated: 01/18/2015 18:09:42
Event String:
The processing of Group Policy failed. Windows attempted to read the file \\cloudchowk.lab\sysvol\cloudchowk.lab\Policies\{31B2F340-016D-11D2-945F-00C04FB984F9}\gpt.ini from a domain controller and was not successful. Group Policy settings may not be applied until this event is resolved. This issue may be transient and could be caused by one or more of the following:
An error event occurred. EventID: 0x00000422
Time Generated: 01/18/2015 18:14:42
Event String:
The processing of Group Policy failed. Windows attempted to read the file \\cloudchowk.lab\sysvol\cloudchowk.lab\Policies\{31B2F340-016D-11D2-945F-00C04FB984F9}\gpt.ini from a domain controller and was not successful. Group Policy settings may not be applied until this event is resolved. This issue may be transient and could be caused by one or more of the following:
An error event occurred. EventID: 0x00000422
Time Generated: 01/18/2015 18:19:43
Event String:
The processing of Group Policy failed. Windows attempted to read the file \\cloudchowk.lab\sysvol\cloudchowk.lab\Policies\{31B2F340-016D-11D2-945F-00C04FB984F9}\gpt.ini from a domain controller and was not successful. Group Policy settings may not be applied until this event is resolved. This issue may be transient and could be caused by one or more of the following:
An error event occurred. EventID: 0x00000422
Time Generated: 01/18/2015 18:24:43
Event String:
The processing of Group Policy failed. Windows attempted to read the file \\cloudchowk.lab\sysvol\cloudchowk.lab\Policies\{31B2F340-016D-11D2-945F-00C04FB984F9}\gpt.ini from a domain controller and was not successful. Group Policy settings may not be applied until this event is resolved. This issue may be transient and could be caused by one or more of the following:
......................... CC-DC03 failed test SystemLog
EVENT VIEWER LOGS
The DFS Replication service initialized SYSVOL at local path C:\Windows\SYSVOL\domain and is waiting to perform initial replication. The replicated folder will remain in the initial synchronization state until it has replicated with its partner CC-DC01.cloudchowk.lab. If the server was in the process of being promoted to a domain controller, the domain controller will not advertize and function as a domain controller until this issue is resolved. This can occur if the specified partner is also in the initial synchronization state, or if sharing violations are encountered on this server or the synchronization partner. If this event occurred during the migration of SYSVOL from File Replication service (FRS) to DFS Replication, changes will not replicate out until this issue is resolved. This can cause the SYSVOL folder on this server to become out of sync with other domain controllers.
Additional Information:
Replicated Folder Name: SYSVOL Share
Replicated Folder ID: 4689406D-D6D8-49E0-8079-2B1D4AE61BC6
Replication Group Name: Domain System Volume
Replication Group ID: 6B162096-2EFA-4D4C-BF13-62CC5B112B97
Member ID: 566943F9-D2FB-4304-823D-10DC972F831A
Read-Only: 0
Should I just start over again by removing DC03 and setting up another DC?
Regards
Sajat Jain

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