Video Layers go invisible

A friend asked me to make an animated forum signature for him but their forum has a rule the sig size must be 650x200.
So i thought i would fit it in my own 650x200 signature and cutting everything outside that out using the wand tool on every layer (125)
I made them visible cut out the outskirts and made it invisible again one by one , with the little eye next to the layer.
After u import Video frames to layers only the first one is visible , but in order to cut in a layer i needed to make it visible , and apperently after u make a layer visible its invisible in the saving (Save for Web option)
After i was finished all i had left with was one layer that was visibile the other 5 seconds were just invisible
Does anyone know how to fix this , i ran into it a couple of times now its getting pretty annoying.
Thanks in advance
(I'm trying to fit video frames in here)

It sound like you checked make frame animation when you imported your video.  Save it as an Animated Gif or try converting it to a video timeline.

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