Video not listing properly - format incompatible?

Question regarding working with video files in lightroom from digital camera...
Trying to find a workflow/format for converting videos from my digital camera (Canon 7d) and have these reside in lightroom. So far I have not had any luck.
Out of the camera, files are in .mov format and h.264. I am surprised at the size of the files. An 71 second clip takes over 400 mb for 1080p. I have spend several days looking for software to compress or adjust this file with minimal luck, either due to software or resulting video being incompatible in lightroom (mainly the later).
Requirements are to keep format compatible with lightroom, minimal loss of quality (visually), reduced file size, and as universal a format as possible.
I have nero 8 and tried Vision (included video editng software). It allows me to emport to mp4 avc, mp2, mp1 and several other flavors. I have tried various adjustments. Results were file sizes between 80mb to 170mb, but with issues in lightroom 3 (not fully recognizing the video file), playback smoothness, jumping/navigating within clip (ie, jumping to 40 second mark, then back to 30 second), and questionable quality (though most looked identical to original).
I have also tried handbrake, Super encoder, Power Directory, Sony Vegas and several others, but no luck.
The original file, plays smoothly, allows me to jump forward and back smoothly, and in Lightroom shows correctly and with extra detail due to sidecar file from camera (exif data).
m4v out of handbrake shows fine in Lightroom with full preview. Without original sidecar file, no exif is available (expected). BUT, when playing the video, it is slow when skipping forward and back.
mpg layer 2, preview is very small in Lightroom and when playing it stutters
mp4 (multiple converters and few other formats) won't show in lightroom, get a triangle error saying "Lightroom has encountered problems reading photo" with no preview.
I like Power Directory, but it only exports 2 usable formats, mp4, which are not compatible with Lightroom (see above), and h.264 format in .m2ts container (definately not compatible with lightroom or many other programs).
Part of debugging this, I have completely uninstalled/reinstalled quicktime to see if that would resolve the preview issue in Lightroom (based on another post recommendation), but no luck.
Any suggestions on what to do next?

Well, I didn't think of doing that, but I tried it on Windows Media Player, it showed a complete duration of 18 minutes, but after the 3 minutes mark, the video stopped moving but the audio continued, just like in Media Player Classic, and I tried it on Quicktime, and again, it showed just the 3 minutes, exactly like Media Player Classic.

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