Video Transistions causing DVD playback to freeze

Has anybody had a problem with video transitions?
I put two video transition in my file, a page turn and a cross wipe. After burning the fie, with chapter markers, in iDVD the DVD freezes video if I try to change chapters to any point past the video transition. The audio plays fine, but the video freezes either at the point the DVD was at before I try to go to the next track or at the video transition it making the transition. I tried playback on 2 DVD players.
I resaved the file from FCE without the video transitions and the playback is fine now. No problems at all.

v. 2 and NTSC standard format (if that answers your question)
What James was trying to do when he came upon this situation was exporting to QT. When the first transition was encountered the picture went to still and audio continued. The first work around he came up with was applying the transparent layer to the whole project. He then discovered that if there were gaps in the time line (usually at the transitions) that was where the problem was more specifically. Applying a transparent layer over just the gaps fixed things as well. He's not available to explain this better, but that is what he showed me a while back.

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    It plays fine on the Mac, but on a consumer DVD
    player, the disc plays for maybe 20 minutes, then the
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