Videos export with purple/green artifacts/splotches/flashes with Media Encoder CC but export fine with Premiere Pro CC?

I use Premiere Pro CC to edit videos, and videos render fine when I export through Premiere Pro, but when I try to use Media Encoder CC, the video exports with weird splotches of green/purple artifacts all throughout. It almost looks like the video is glitching and having a seizure of green and purple. No idea why this happens. Could anybody help me? I use Media Encoder to export bulks of videos at a time through its queue feature, which is why I prefer to use Media Encoder for video exporting.
Please and thanks.
Specs:
Motherboard: MSI® Z87-G45 Gaming [Red on Black color] 2x SLI/CrossFire
Processor: Intel® Core™ i7 4770K 3.5GHz/3.9GHz Turbo 8MB L3 Cache HD 4600
Memory: 16GB Corsair® Vengeance™ DDR3-1600 1.5V (2x8GB)
Graphics and GPGPU Accelerator: AMD R9 295x2
Power Supply: 1300W EVGA
Operating System: Microsoft Windows 7 Home Premium 64-bit

Mitch,
I was hoping that you and others might have some insight as to whether the purple and green artifacts / splotches seen in the attached screenshots (taken from 4 consecutive frames here but occurring through the entirety of the clip) could possibly have resulted from exporting video with ~ Premiere Pro CS5 or 6 ? As seen below, these splotches alternate back and forth between purple and green in every consecutive frame. I was also hoping that someone might know if this is a relatively common type of artifact and how it is caused.

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Videos export with purple/green artifacts/splotches/flashes with Media Encoder CC but export fine with Premiere Pro CC?

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